Wall clock time and date at job start Sun Mar 29 2020 21:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.52417 * 2 1 4 4 C 1.53124 * 109.52248 * 239.87470 * 2 1 3 5 5 C 1.53038 * 109.27442 * 182.37430 * 4 2 1 6 6 N 1.46843 * 109.52215 * 59.18167 * 5 4 2 7 7 C 1.46903 * 111.00081 * 174.15943 * 6 5 4 8 8 C 1.50694 * 109.47330 * 66.04204 * 7 6 5 9 9 H 1.08002 * 120.00179 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00472 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99350 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00608 * 179.97438 * 10 8 7 13 13 H 1.48490 * 109.47339 * 179.97438 * 12 10 8 14 14 H 1.48493 * 109.47239 * 300.00306 * 12 10 8 15 15 H 1.48504 * 109.46636 * 59.99865 * 12 10 8 16 16 C 1.46846 * 111.19853 * 298.25280 * 6 5 4 17 17 C 1.53033 * 109.52432 * 61.74383 * 16 6 5 18 18 H 1.08997 * 109.53427 * 60.78346 * 17 16 6 19 19 C 1.53002 * 109.50474 * 180.88125 * 17 16 6 20 20 H 1.09004 * 109.47068 * 180.12757 * 1 2 3 21 21 H 1.09004 * 109.47413 * 300.12885 * 1 2 3 22 22 H 1.09003 * 109.47176 * 60.12966 * 1 2 3 23 23 H 1.09003 * 109.50107 * 62.43619 * 4 2 1 24 24 H 1.08997 * 109.49832 * 302.31530 * 4 2 1 25 25 H 1.09003 * 109.46591 * 299.16065 * 5 4 2 26 26 H 1.08998 * 109.45088 * 179.18977 * 5 4 2 27 27 H 1.09005 * 109.46786 * 306.04763 * 7 6 5 28 28 H 1.08998 * 109.47526 * 186.04482 * 7 6 5 29 29 H 0.97005 * 119.99661 * 179.97438 * 11 10 8 30 30 H 1.08999 * 109.46248 * 181.76250 * 16 6 5 31 31 H 1.09005 * 109.46254 * 301.72875 * 16 6 5 32 32 H 1.09007 * 109.46973 * 179.80369 * 19 17 16 33 33 H 1.08997 * 109.47043 * 299.80335 * 19 17 16 34 34 H 1.09001 * 109.47245 * 59.80485 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7243 -1.2483 5 6 3.5709 -0.7730 -1.2129 6 7 4.0115 -1.4766 -0.0016 7 6 5.4685 -1.6641 -0.0024 8 6 6.1477 -0.3224 0.0952 9 1 5.5563 0.5794 0.1524 10 6 7.5243 -0.2461 0.1113 11 7 8.2446 -1.3443 0.0421 12 14 8.3663 1.4171 0.2315 13 1 9.8391 1.2275 0.2309 14 1 7.9742 2.2555 -0.9297 15 1 7.9549 2.0903 1.4896 16 6 3.5721 -0.7735 1.2104 17 6 2.0430 -0.7247 1.2474 18 1 1.6464 -1.7398 1.2675 19 6 1.5860 0.0270 2.4992 20 1 -0.3633 -1.0277 0.0023 21 1 -0.3634 0.5158 0.8888 22 1 -0.3634 0.5118 -0.8912 23 1 1.7151 -0.1884 -2.1395 24 1 1.6455 -1.7396 -1.2678 25 1 3.9666 0.2427 -1.2072 26 1 3.9377 -1.3008 -2.0932 27 1 5.7708 -2.1580 -0.9259 28 1 5.7561 -2.2797 0.8499 29 1 9.2131 -1.2906 0.0531 30 1 3.9401 -1.3015 2.0901 31 1 3.9678 0.2422 1.2047 32 1 0.4968 0.0644 2.5232 33 1 1.9515 -0.4893 3.3868 34 1 1.9840 1.0416 2.4793 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252727843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:25 Heat of formation + Delta-G solvation = -42.601948 kcal Electronic energy + Delta-G solvation = -13200.083639 eV Core-core repulsion = 11130.886884 eV Total energy + Delta-G solvation = -2069.196755 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.22920 -36.37974 -34.33494 -32.97630 -30.00837 -28.04748 -26.89978 -24.49735 -22.94688 -21.85657 -20.51389 -18.50454 -16.88137 -16.07869 -15.81471 -15.39486 -15.25986 -15.04314 -14.37515 -13.80624 -13.44004 -13.19465 -13.07352 -12.80582 -12.71154 -12.66917 -12.48614 -12.09719 -12.01148 -11.85493 -11.75017 -11.36627 -10.93072 -10.83745 -10.63245 -9.01910 -8.17344 -6.38429 1.33866 1.35785 1.44184 2.34609 3.06028 3.37922 3.87899 3.96137 4.03898 4.29890 4.56480 4.59263 4.70892 4.75555 4.81505 4.85845 4.97395 5.01294 5.06003 5.14754 5.17865 5.19701 5.27801 5.34054 5.37565 5.42187 5.54756 5.66743 5.72258 6.04519 6.26966 6.58370 6.83230 7.33136 8.84414 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046664 B = 0.009562 C = 0.009208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.888770 B = 2927.704832 C = 3040.128057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.054 0.946 4 C -0.102 4.102 5 C 0.062 3.938 6 N -0.544 5.544 7 C 0.199 3.801 8 C -0.558 4.558 9 H 0.054 0.946 10 C 0.010 3.990 11 N -0.927 5.927 12 Si 0.959 3.041 13 H -0.279 1.279 14 H -0.270 1.270 15 H -0.270 1.270 16 C 0.072 3.928 17 C -0.079 4.079 18 H 0.073 0.927 19 C -0.140 4.140 20 H 0.058 0.942 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.013 0.987 26 H 0.052 0.948 27 H 0.003 0.997 28 H 0.002 0.998 29 H 0.266 0.734 30 H 0.047 0.953 31 H 0.014 0.986 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.117 3.898 0.933 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.073 0.927 4 C -0.140 4.140 5 C -0.066 4.066 6 N -0.267 5.267 7 C 0.072 3.928 8 C -0.597 4.597 9 H 0.072 0.928 10 C -0.190 4.190 11 N -0.566 5.566 12 Si 0.783 3.217 13 H -0.204 1.204 14 H -0.195 1.195 15 H -0.195 1.195 16 C -0.056 4.056 17 C -0.098 4.098 18 H 0.091 0.909 19 C -0.198 4.198 20 H 0.077 0.923 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.158 3.352 0.925 14.579 hybrid contribution 1.682 1.282 0.005 2.115 sum -12.476 4.635 0.930 13.342 Atomic orbital electron populations 1.21790 0.92959 1.02276 1.02340 1.21185 0.97045 0.98284 0.94028 0.92749 1.21640 0.92841 1.01227 0.98270 1.21921 0.96335 0.95756 0.92601 1.62374 1.13470 1.48369 1.02505 1.19400 0.83514 0.94785 0.95085 1.21943 0.92321 0.94250 1.51188 0.92751 1.25866 0.98276 1.00349 0.94487 1.70065 1.06314 1.29393 1.50853 0.85597 0.77424 0.79660 0.78973 1.20394 1.19466 1.19456 1.21933 0.95615 0.95749 0.92300 1.21202 0.92876 1.00011 0.95701 0.90895 1.21803 1.02051 0.99629 0.96306 0.92263 0.91517 0.91996 0.90356 0.91266 0.96891 0.92935 0.97894 0.97971 0.92512 0.93417 0.96748 0.90186 0.92807 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.90 71.98 0.64 -2.09 16 2 C -0.09 -2.39 2.28 -10.71 -0.02 -2.41 16 3 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 4 C -0.10 -3.08 5.38 30.65 0.16 -2.91 16 5 C 0.06 2.53 5.13 86.33 0.44 2.97 16 6 N -0.54 -24.82 4.86 -900.94 -4.38 -29.20 16 7 C 0.20 11.05 5.13 85.55 0.44 11.49 16 8 C -0.56 -32.17 7.74 25.60 0.20 -31.98 16 9 H 0.05 3.10 5.84 -2.91 -0.02 3.08 16 10 C 0.01 0.55 5.46 84.66 0.46 1.02 16 11 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 12 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 16 C 0.07 2.97 4.29 86.32 0.37 3.34 16 17 C -0.08 -2.40 2.39 -10.74 -0.03 -2.43 16 18 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 19 C -0.14 -3.47 8.90 71.98 0.64 -2.83 16 20 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 21 H 0.07 1.17 6.52 -2.39 -0.02 1.16 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 25 H 0.01 0.57 7.03 -2.39 -0.02 0.55 16 26 H 0.05 2.18 8.06 -2.39 -0.02 2.16 16 27 H 0.00 0.17 8.06 -2.38 -0.02 0.15 16 28 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 30 H 0.05 2.04 8.12 -2.39 -0.02 2.02 16 31 H 0.01 0.65 6.57 -2.38 -0.02 0.63 16 32 H 0.08 1.56 6.51 -2.38 -0.02 1.54 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -63.32 262.92 2.28 -61.04 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 1.04 Total: 3.41 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 3.31 Total: -25.83 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -4.09 Total: -85.50 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -63.32 2.28 -61.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252727843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.435 kcal (2) G-P(sol) polarization free energy of solvation -63.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds