Wall clock time and date at job start Sun Mar 29 2020 21:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.38608 * 119.99898 * 179.97438 * 11 10 9 13 13 N 1.29692 * 124.95195 * 359.70370 * 12 11 10 14 14 C 1.32122 * 116.86532 * 179.81175 * 13 12 11 15 15 C 1.33320 * 114.58095 * 0.46891 * 14 13 12 16 16 S 1.70963 * 124.95008 * 179.97438 * 12 11 10 17 17 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 19 19 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 20 20 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 21 21 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 22 22 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 23 23 H 1.07999 * 122.70253 * 180.22917 * 14 13 12 24 24 H 1.08003 * 125.95033 * 179.75914 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.2059 -6.1311 0.0013 13 7 3.4980 -6.2431 -0.0052 14 6 3.9911 -7.4688 -0.0009 15 6 3.0734 -8.4358 -0.0001 16 16 1.4821 -7.6800 0.0024 17 1 -0.4850 0.8400 -0.0004 18 1 0.6241 -2.5575 -0.8880 19 1 0.6247 -2.5564 0.8919 20 1 2.8714 -3.6047 -0.8890 21 1 2.8726 -3.6039 0.8910 22 1 0.5429 -4.9308 0.0020 23 1 5.0520 -7.6709 -0.0020 24 1 3.2710 -9.4976 -0.0005 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259300549.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:13 Heat of formation + Delta-G solvation = 36.736787 kcal Electronic energy + Delta-G solvation = -9939.661547 eV Core-core repulsion = 7979.565949 eV Total energy + Delta-G solvation = -1960.095598 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 198.052 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.24208 -35.82293 -33.06553 -30.26355 -28.40042 -25.19819 -23.49215 -21.43818 -19.27049 -18.49919 -16.44149 -15.65431 -14.89298 -14.80213 -14.37562 -14.15183 -13.37389 -12.73154 -12.25634 -11.28614 -11.20240 -11.17711 -10.68415 -10.62726 -9.66342 -9.65093 -9.37487 -9.16026 -9.00400 -8.46398 -7.34827 -6.11649 -4.14686 1.31398 1.41437 2.05669 3.27292 3.31278 3.34815 3.39646 3.69342 4.39894 5.02904 5.25593 5.49405 5.83252 6.19287 6.31336 6.32000 6.71533 7.22816 7.50010 7.57968 7.60383 7.87271 8.22476 8.40701 8.91300 9.50283 11.00045 Molecular weight = 198.05amu Principal moments of inertia in cm(-1) A = 0.092973 B = 0.006519 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.090983 B = 4293.923990 C = 4574.567792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.011 3.989 10 C 0.136 3.864 11 N -0.683 5.683 12 C 0.337 3.663 13 N -0.562 5.562 14 C 0.094 3.906 15 C -0.319 4.319 16 S 0.050 5.950 17 H 0.262 0.738 18 H 0.023 0.977 19 H 0.023 0.977 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.412 0.588 23 H 0.169 0.831 24 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -13.390 0.014 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.027 4.027 10 C 0.012 3.988 11 N -0.319 5.319 12 C -0.035 4.035 13 N -0.289 5.289 14 C -0.057 4.057 15 C -0.461 4.461 16 S 0.297 5.703 17 H 0.071 0.929 18 H 0.041 0.959 19 H 0.041 0.959 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.248 0.752 23 H 0.186 0.814 24 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.991 -12.958 0.010 13.110 hybrid contribution 0.937 0.706 0.001 1.173 sum 2.928 -12.252 0.011 12.597 Atomic orbital electron populations 1.69963 1.06116 1.26833 1.50347 1.25009 0.94908 0.99482 0.94960 0.86437 0.80150 0.83239 0.77631 1.19547 1.20912 1.20917 1.21054 0.93285 0.90196 1.51361 0.92113 1.19352 0.94297 0.91080 0.97926 1.21816 0.95864 0.80261 1.00908 1.44725 1.08336 1.01854 1.77007 1.23878 0.91174 0.92081 0.96411 1.66479 1.08820 1.24904 1.28674 1.21407 1.00773 0.85588 0.97952 1.26206 0.92843 1.03938 1.23072 1.83846 1.11367 0.99406 1.75666 0.92855 0.95888 0.95883 0.92448 0.92452 0.75172 0.81417 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 14 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 14 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 14 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 14 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 14 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 14 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 14 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 14 9 C 0.01 0.28 5.09 -27.88 -0.14 0.13 14 10 C 0.14 2.87 5.89 -4.04 -0.02 2.85 14 11 N -0.68 -12.30 5.71 -62.30 -0.36 -12.66 14 12 C 0.34 5.82 8.09 -87.68 -0.71 5.11 14 13 N -0.56 -10.11 10.14 -15.21 -0.15 -10.27 14 14 C 0.09 1.35 11.34 -19.14 -0.22 1.13 14 15 C -0.32 -4.06 11.34 29.01 0.33 -3.73 14 16 S 0.05 0.69 23.22 -107.50 -2.50 -1.81 14 17 H 0.26 7.21 8.31 -40.82 -0.34 6.87 14 18 H 0.02 0.59 8.14 -51.93 -0.42 0.17 14 19 H 0.02 0.59 8.14 -51.93 -0.42 0.17 14 20 H 0.06 1.26 8.14 -51.93 -0.42 0.83 14 21 H 0.06 1.26 8.14 -51.93 -0.42 0.83 14 22 H 0.41 6.63 8.60 -40.82 -0.35 6.28 14 23 H 0.17 1.89 8.06 -52.49 -0.42 1.47 14 24 H 0.17 1.61 8.06 -52.48 -0.42 1.19 14 LS Contribution 232.86 15.07 3.51 3.51 Total: -1.00 -29.96 232.86 -7.38 -37.34 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -2.43 Total: 0.64 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.17 Total: -7.67 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.23 Total: -48.31 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.50 Total: -1.81 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.96 -7.38 -37.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259300549.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.076 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds