Wall clock time and date at job start Sun Mar 29 2020 21:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47207 * 2 1 4 4 N 1.46898 * 109.46926 * 119.99907 * 2 1 3 5 5 C 1.46905 * 111.00098 * 292.70308 * 4 2 1 6 6 C 1.50693 * 109.46880 * 74.03664 * 5 4 2 7 7 H 1.07999 * 120.00137 * 3.23770 * 6 5 4 8 8 C 1.37883 * 120.00072 * 183.23816 * 6 5 4 9 9 N 1.31516 * 119.99946 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00312 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46797 * 60.00380 * 10 8 6 12 12 H 1.48497 * 109.47162 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47267 * 300.00692 * 10 8 6 14 14 C 1.46906 * 111.00112 * 168.75219 * 4 2 1 15 15 C 1.53783 * 113.68800 * 90.93146 * 14 4 2 16 16 C 1.53785 * 87.07851 * 139.99785 * 15 14 4 17 17 C 1.53776 * 113.61737 * 188.47178 * 14 4 2 18 18 H 1.09008 * 109.47440 * 309.23500 * 1 2 3 19 19 H 1.08998 * 109.47669 * 69.23531 * 1 2 3 20 20 H 1.08996 * 109.47256 * 189.23703 * 1 2 3 21 21 H 1.08992 * 109.47366 * 239.99742 * 2 1 3 22 22 H 1.08999 * 109.47125 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47357 * 300.00077 * 3 2 1 24 24 H 1.09001 * 109.47115 * 59.99649 * 3 2 1 25 25 H 1.09002 * 109.47332 * 194.03496 * 5 4 2 26 26 H 1.09000 * 109.46998 * 314.03713 * 5 4 2 27 27 H 0.96996 * 120.00361 * 180.02562 * 9 8 6 28 28 H 1.09001 * 112.84586 * 319.66867 * 14 4 2 29 29 H 1.09001 * 113.61267 * 254.53866 * 15 14 4 30 30 H 1.08988 * 113.61860 * 25.45136 * 15 14 4 31 31 H 1.08999 * 113.61511 * 220.02015 * 16 15 14 32 32 H 1.09001 * 113.61701 * 89.11402 * 16 15 14 33 33 H 1.09002 * 113.61577 * 334.48088 * 17 14 4 34 34 H 1.08993 * 113.61707 * 105.30217 * 17 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.6960 0.0668 2.4147 6 6 0.2247 -0.0653 2.7127 7 1 -0.3968 -0.6963 2.0947 8 6 -0.3279 0.6194 3.7742 9 7 0.4289 1.3883 4.5264 10 14 -2.1518 0.4562 4.1432 11 1 -2.4742 -0.9654 4.4265 12 1 -2.4937 1.2860 5.3263 13 1 -2.9373 0.9177 2.9705 14 6 3.4633 -0.9482 1.1073 15 6 4.3289 0.1760 1.7004 16 6 5.2339 -0.9288 2.2707 17 6 4.0023 -1.8490 2.2310 18 1 -0.3634 0.6500 0.7960 19 1 -0.3634 0.3643 -0.9609 20 1 -0.3633 -1.0143 0.1650 21 1 1.8933 -0.5138 -0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 2.2730 -0.3250 3.2524 26 1 1.9431 1.1176 2.2632 27 1 0.0402 1.8697 5.2734 28 1 3.7751 -1.2597 0.1104 29 1 4.8170 0.7947 0.9473 30 1 3.8198 0.7617 2.4656 31 1 5.5924 -0.7224 3.2791 32 1 6.0298 -1.2351 1.5918 33 1 3.4038 -1.8169 3.1414 34 1 4.2254 -2.8654 1.9067 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261167201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:19 Heat of formation + Delta-G solvation = 9.672300 kcal Electronic energy + Delta-G solvation = -13520.417784 eV Core-core repulsion = 11453.487811 eV Total energy + Delta-G solvation = -2066.929973 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.76227 -37.15682 -34.59322 -31.52996 -29.27439 -28.00881 -26.26355 -25.12635 -24.10853 -20.60590 -19.67106 -18.53673 -17.12961 -16.62741 -16.17906 -15.75342 -14.86598 -14.44902 -14.06816 -13.74690 -13.31923 -13.12648 -12.95389 -12.89751 -12.73636 -12.57874 -12.33306 -12.05627 -11.97076 -11.59898 -11.25788 -11.18868 -10.91218 -10.77608 -10.43691 -8.74692 -8.09887 -6.13076 1.41697 1.43610 1.50844 2.44713 3.21607 3.37345 3.88310 3.89769 4.06670 4.15157 4.28290 4.46307 4.57112 4.76459 4.83472 4.88080 4.96696 5.02256 5.02538 5.13008 5.13900 5.20009 5.29329 5.36244 5.43733 5.61074 5.70930 5.79293 5.83232 6.24623 6.59022 6.85172 7.01173 7.51241 8.99894 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036391 B = 0.012687 C = 0.010833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.233355 B = 2206.492693 C = 2584.108734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.088 3.912 3 C -0.175 4.175 4 N -0.536 5.536 5 C 0.207 3.793 6 C -0.506 4.506 7 H 0.072 0.928 8 C -0.001 4.001 9 N -0.938 5.938 10 Si 0.953 3.047 11 H -0.272 1.272 12 H -0.289 1.289 13 H -0.267 1.267 14 C 0.060 3.940 15 C -0.177 4.177 16 C -0.126 4.126 17 C -0.133 4.133 18 H 0.056 0.944 19 H 0.058 0.942 20 H 0.045 0.955 21 H 0.083 0.917 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.034 0.966 25 H -0.003 1.003 26 H -0.011 1.011 27 H 0.259 0.741 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.587 -2.969 -8.274 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 C -0.234 4.234 4 N -0.258 5.258 5 C 0.081 3.919 6 C -0.545 4.545 7 H 0.090 0.910 8 C -0.198 4.198 9 N -0.580 5.580 10 Si 0.779 3.221 11 H -0.197 1.197 12 H -0.214 1.214 13 H -0.192 1.192 14 C -0.049 4.049 15 C -0.216 4.216 16 C -0.164 4.164 17 C -0.171 4.171 18 H 0.075 0.925 19 H 0.076 0.924 20 H 0.064 0.936 21 H 0.101 0.899 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.015 0.985 26 H 0.007 0.993 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.309 -3.324 -8.106 10.245 hybrid contribution -0.564 1.026 0.786 1.410 sum 4.745 -2.298 -7.321 9.022 Atomic orbital electron populations 1.22054 0.95153 1.01565 1.00802 1.21548 0.95840 0.92170 0.92512 1.22429 1.00885 0.98770 1.01286 1.62229 1.12747 1.47736 1.03082 1.19455 0.94868 0.90798 0.86793 1.21775 0.95102 1.25716 1.11885 0.91046 1.25775 1.02107 0.95637 0.96297 1.70081 1.37237 1.31480 1.19226 0.85671 0.80704 0.78086 0.77623 1.19736 1.21439 1.19201 1.23306 0.86765 0.95951 0.98915 1.23607 0.99294 0.97870 1.00815 1.22707 0.96379 0.95986 1.01310 1.22989 0.96816 0.98775 0.98544 0.92495 0.92358 0.93611 0.89870 0.92452 0.91458 0.94652 0.98507 0.99310 0.93234 0.87032 0.91052 0.92609 0.92115 0.87681 0.92858 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 7.72 71.98 0.56 -4.81 16 2 C 0.09 3.26 2.91 44.91 0.13 3.39 16 3 C -0.18 -6.33 8.20 71.98 0.59 -5.74 16 4 N -0.54 -22.71 4.60 -847.35 -3.89 -26.60 16 5 C 0.21 10.72 2.95 85.55 0.25 10.97 16 6 C -0.51 -28.19 6.69 25.60 0.17 -28.02 16 7 H 0.07 3.89 5.57 -2.91 -0.02 3.88 16 8 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 9 N -0.94 -56.89 13.29 21.45 0.28 -56.61 16 10 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 C 0.06 2.08 3.58 45.44 0.16 2.25 16 15 C -0.18 -6.07 5.68 31.12 0.18 -5.89 16 16 C -0.13 -3.64 8.08 31.12 0.25 -3.39 16 17 C -0.13 -4.48 7.53 31.12 0.23 -4.25 16 18 H 0.06 2.61 5.66 -2.38 -0.01 2.60 16 19 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 20 H 0.04 1.81 7.48 -2.39 -0.02 1.79 16 21 H 0.08 2.64 7.90 -2.39 -0.02 2.62 16 22 H 0.06 1.91 5.81 -2.39 -0.01 1.90 16 23 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.03 1.55 6.03 -2.39 -0.01 1.54 16 25 H 0.00 -0.17 5.76 -2.39 -0.01 -0.19 16 26 H -0.01 -0.59 4.62 -2.39 -0.01 -0.60 16 27 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 28 H 0.11 3.28 7.90 -2.39 -0.02 3.26 16 29 H 0.07 2.15 7.43 -2.39 -0.02 2.13 16 30 H 0.06 2.39 5.69 -2.39 -0.01 2.38 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 2.19 6.59 -2.39 -0.02 2.17 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -61.79 252.97 2.47 -59.32 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.07 Total: 12.15 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 2.99 Total: -35.10 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -3.61 Total: -83.21 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -61.79 2.47 -59.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.995 kcal (2) G-P(sol) polarization free energy of solvation -61.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds