Wall clock time and date at job start Sun Mar 29 2020 21:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47143 * 2 1 4 4 H 1.08998 * 109.49453 * 301.23631 * 3 2 1 5 5 C 1.53039 * 109.49901 * 181.16613 * 3 2 1 6 6 C 1.53038 * 109.53667 * 178.65313 * 5 3 2 7 7 C 1.53185 * 109.31667 * 61.36542 * 6 5 3 8 8 H 1.08998 * 109.58652 * 65.14789 * 7 6 5 9 9 C 1.52998 * 109.70534 * 185.50943 * 7 6 5 10 10 N 1.46931 * 108.77517 * 305.36624 * 7 6 5 11 11 C 1.36931 * 120.62666 * 233.58602 * 10 7 6 12 12 H 1.08002 * 120.00251 * 35.68723 * 11 10 7 13 13 C 1.38817 * 119.99788 * 215.95858 * 11 10 7 14 14 N 1.31618 * 119.99900 * 186.24388 * 13 11 10 15 15 Si 1.86798 * 119.99848 * 6.25260 * 13 11 10 16 16 H 1.48499 * 109.47385 * 54.09739 * 15 13 11 17 17 H 1.48502 * 109.47166 * 174.10017 * 15 13 11 18 18 H 1.48508 * 109.46915 * 294.09744 * 15 13 11 19 19 C 1.46925 * 118.73732 * 53.85851 * 10 7 6 20 20 H 1.09000 * 109.46899 * 302.14099 * 1 2 3 21 21 H 1.09003 * 109.46826 * 62.14210 * 1 2 3 22 22 H 1.08999 * 109.46736 * 182.14091 * 1 2 3 23 23 H 1.08995 * 109.46928 * 239.99915 * 2 1 3 24 24 H 1.09004 * 109.46979 * 119.99728 * 2 1 3 25 25 H 1.08999 * 109.45580 * 58.62515 * 5 3 2 26 26 H 1.09003 * 109.45762 * 298.67257 * 5 3 2 27 27 H 1.09005 * 109.49482 * 301.41108 * 6 5 3 28 28 H 1.09003 * 109.49331 * 181.31862 * 6 5 3 29 29 H 1.09002 * 109.47128 * 179.36394 * 9 7 6 30 30 H 1.09002 * 109.46882 * 299.35399 * 9 7 6 31 31 H 1.08997 * 109.47249 * 59.35534 * 9 7 6 32 32 H 0.97001 * 119.99700 * 180.02562 * 14 13 11 33 33 H 1.08992 * 109.58471 * 65.93240 * 19 10 7 34 34 H 1.09006 * 109.58356 * 186.35402 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6590 1.9631 -0.8785 5 6 3.5702 1.4434 -0.0294 6 6 4.0806 2.8857 -0.0633 7 6 3.6210 3.6158 1.2025 8 1 4.0929 3.1654 2.0758 9 6 4.0080 5.0934 1.1152 10 7 2.1610 3.4948 1.3144 11 6 1.3779 4.6086 1.4609 12 1 1.6443 5.5261 0.9572 13 6 0.2448 4.5600 2.2613 14 7 -0.5743 5.5893 2.3055 15 14 -0.1174 3.0338 3.2756 16 1 1.0605 2.7093 4.1196 17 1 -1.2950 3.2850 4.1447 18 1 -0.4057 1.8936 2.3687 19 6 1.5577 2.1558 1.2723 20 1 -0.3633 0.5467 0.8702 21 1 -0.3633 0.4802 -0.9086 22 1 -0.3633 -1.0270 0.0384 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.9166 0.9144 -0.9173 26 1 3.9507 0.9443 0.8619 27 1 3.6804 3.3927 -0.9413 28 1 5.1698 2.8852 -0.1078 29 1 3.6693 5.6114 2.0124 30 1 5.0914 5.1809 1.0323 31 1 3.5393 5.5406 0.2386 32 1 -1.3659 5.5554 2.8651 33 1 1.8648 1.5889 2.1511 34 1 0.4715 2.2448 1.2535 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306213141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:02 Heat of formation + Delta-G solvation = -12.809080 kcal Electronic energy + Delta-G solvation = -13595.182690 eV Core-core repulsion = 11527.277851 eV Total energy + Delta-G solvation = -2067.904839 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.97931 -36.07036 -34.62415 -32.59243 -31.46774 -27.64984 -26.83517 -24.88851 -23.05918 -21.23845 -20.89386 -18.48601 -17.39955 -16.48392 -15.60593 -15.26949 -15.12143 -14.82974 -14.58800 -14.13700 -13.89682 -13.41627 -13.10177 -12.99940 -12.60988 -12.41128 -12.23309 -11.99838 -11.82214 -11.64743 -11.57603 -11.38295 -11.07854 -10.93761 -10.34009 -8.72531 -8.11510 -5.54412 1.26897 1.38529 1.46447 2.43408 3.17813 3.29928 3.89117 4.03364 4.11843 4.20243 4.41866 4.49394 4.56662 4.59911 4.71223 4.74977 4.87625 4.95252 4.98192 5.07974 5.11268 5.17769 5.22166 5.27728 5.31958 5.46417 5.50555 5.52251 5.69229 5.99573 6.22381 7.00397 7.68215 8.11976 9.07862 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026164 B = 0.019650 C = 0.012542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.932405 B = 1424.575719 C = 2232.023540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.110 4.110 3 C -0.101 4.101 4 H 0.054 0.946 5 C -0.102 4.102 6 C -0.123 4.123 7 C 0.158 3.842 8 H 0.031 0.969 9 C -0.129 4.129 10 N -0.623 5.623 11 C -0.238 4.238 12 H 0.055 0.945 13 C -0.038 4.038 14 N -0.968 5.968 15 Si 0.941 3.059 16 H -0.282 1.282 17 H -0.317 1.317 18 H -0.231 1.231 19 C 0.113 3.887 20 H 0.035 0.965 21 H 0.051 0.949 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.259 0.741 33 H 0.020 0.980 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.992 -11.825 -4.634 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.148 4.148 3 C -0.121 4.121 4 H 0.072 0.928 5 C -0.140 4.140 6 C -0.162 4.162 7 C 0.053 3.947 8 H 0.049 0.951 9 C -0.186 4.186 10 N -0.348 5.348 11 C -0.368 4.368 12 H 0.073 0.927 13 C -0.232 4.232 14 N -0.615 5.615 15 Si 0.772 3.228 16 H -0.208 1.208 17 H -0.246 1.246 18 H -0.157 1.157 19 C -0.011 4.011 20 H 0.054 0.946 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.879 -11.754 -4.573 14.871 hybrid contribution -0.759 0.106 0.800 1.108 sum 7.120 -11.648 -3.773 14.164 Atomic orbital electron populations 1.21906 0.96640 1.01941 1.01240 1.21511 0.95440 0.95147 1.02702 1.21679 0.96793 0.95989 0.97653 0.92752 1.21463 0.93958 0.96330 1.02201 1.21958 1.00636 0.96058 0.97507 1.20784 0.82676 0.95348 0.95878 0.95122 1.21723 1.00423 0.95806 1.00673 1.44648 1.02293 1.01773 1.86133 1.18818 1.05014 0.91528 1.21397 0.92733 1.26127 0.98469 0.99559 0.99067 1.69890 1.15081 1.32686 1.43860 0.86377 0.75957 0.81607 0.78900 1.20812 1.24643 1.15673 1.21988 0.97808 0.85479 0.95803 0.94603 0.93007 0.90970 0.89932 0.91724 0.90218 0.92053 0.93268 0.89724 0.94704 0.90274 0.94247 0.93229 0.96175 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.52 9.66 71.98 0.70 -3.82 16 2 C -0.11 -2.95 5.45 30.60 0.17 -2.79 16 3 C -0.10 -3.40 2.39 -10.57 -0.03 -3.42 16 4 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 5 C -0.10 -2.90 5.16 30.62 0.16 -2.74 16 6 C -0.12 -3.83 5.38 30.67 0.16 -3.67 16 7 C 0.16 6.23 3.49 44.97 0.16 6.39 16 8 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 9 C -0.13 -4.95 8.01 71.98 0.58 -4.37 16 10 N -0.62 -29.96 2.72 -674.40 -1.84 -31.80 16 11 C -0.24 -13.73 8.92 84.04 0.75 -12.98 16 12 H 0.06 3.44 6.64 -2.91 -0.02 3.42 16 13 C -0.04 -2.31 5.41 84.86 0.46 -1.85 16 14 N -0.97 -62.60 13.97 21.65 0.30 -62.30 16 15 Si 0.94 47.51 24.56 68.60 1.68 49.19 16 16 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 17 H -0.32 -16.37 7.11 99.48 0.71 -15.66 16 18 H -0.23 -10.40 4.28 99.48 0.43 -9.97 16 19 C 0.11 4.86 2.82 86.51 0.24 5.11 16 20 H 0.03 1.19 5.47 -2.39 -0.01 1.18 16 21 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.03 1.50 7.68 -2.39 -0.02 1.48 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.04 1.60 7.41 -2.39 -0.02 1.59 16 32 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 33 H 0.02 0.87 7.19 -2.39 -0.02 0.85 16 34 H 0.06 3.00 2.97 -2.38 -0.01 2.99 16 Total: -1.00 -66.51 251.66 4.26 -62.25 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 0.76 Total: 6.80 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 3.35 Total: -24.15 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -1.53 Total: -94.10 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.68 Total: 49.19 kcal Total: -66.51 4.26 -62.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306213141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.439 kcal (2) G-P(sol) polarization free energy of solvation -66.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds