Wall clock time and date at job start Sun Mar 29 2020 21:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52188 * 2 1 4 4 C 1.53188 * 109.49562 * 239.92454 * 2 1 3 5 5 N 1.46926 * 108.77621 * 185.41079 * 4 2 1 6 6 C 1.36937 * 120.63483 * 233.58812 * 5 4 2 7 7 H 1.08000 * 120.00005 * 27.69422 * 6 5 4 8 8 C 1.38816 * 120.00323 * 207.69866 * 6 5 4 9 9 N 1.31620 * 119.99791 * 17.35473 * 8 6 5 10 10 Si 1.86800 * 120.00086 * 197.35012 * 8 6 5 11 11 H 1.48497 * 109.46819 * 59.99959 * 10 8 6 12 12 H 1.48496 * 109.46830 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47148 * 299.99810 * 10 8 6 14 14 C 1.46926 * 118.73812 * 53.60636 * 5 4 2 15 15 C 1.53188 * 108.77610 * 306.39243 * 14 5 4 16 16 C 1.52997 * 109.49884 * 294.68324 * 15 14 5 17 17 C 1.53005 * 109.52473 * 174.59975 * 15 14 5 18 18 C 1.53032 * 109.50073 * 120.08532 * 2 1 3 19 19 H 1.08999 * 109.46964 * 299.91438 * 1 2 3 20 20 H 1.09002 * 109.47204 * 59.91768 * 1 2 3 21 21 H 1.09004 * 109.46993 * 179.91803 * 1 2 3 22 22 H 1.09000 * 109.59201 * 65.62704 * 4 2 1 23 23 H 1.08999 * 109.58851 * 305.19504 * 4 2 1 24 24 H 0.97002 * 119.99650 * 180.02562 * 9 8 6 25 25 H 1.09000 * 109.58743 * 186.60367 * 14 5 4 26 26 H 1.09008 * 109.58704 * 66.18054 * 14 5 4 27 27 H 1.09005 * 109.47423 * 179.83462 * 16 15 14 28 28 H 1.09001 * 109.46888 * 299.83751 * 16 15 14 29 29 H 1.08997 * 109.47048 * 59.83657 * 16 15 14 30 30 H 1.08991 * 109.47034 * 300.14563 * 17 15 14 31 31 H 1.09001 * 109.46802 * 60.15026 * 17 15 14 32 32 H 1.09004 * 109.46980 * 180.14477 * 17 15 14 33 33 H 1.08996 * 109.46273 * 61.29468 * 18 2 1 34 34 H 1.09007 * 109.46266 * 301.33616 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2496 5 7 3.5046 -0.8290 -1.1697 6 6 4.2935 -0.3791 -2.1946 7 1 3.9467 0.4209 -2.8319 8 6 5.5391 -0.9512 -2.4143 9 7 5.8278 -2.1219 -1.8867 10 14 6.8052 -0.0595 -3.4590 11 1 7.1178 1.2550 -2.8431 12 1 8.0431 -0.8757 -3.5402 13 1 6.2609 0.1505 -4.8246 14 6 4.1053 -1.4266 0.0306 15 6 3.5709 -0.6950 1.2658 16 6 4.0552 0.7562 1.2492 17 6 4.0799 -1.3888 2.5310 18 6 2.0409 -0.7231 1.2482 19 1 -0.3633 0.5125 0.8907 20 1 -0.3634 0.5151 -0.8893 21 1 -0.3633 -1.0277 -0.0015 22 1 1.7638 -0.1578 -2.1389 23 1 1.6053 -1.7215 -1.2981 24 1 6.6983 -2.5215 -2.0400 25 1 5.1896 -1.3245 -0.0140 26 1 3.8376 -2.4818 0.0865 27 1 3.6724 1.2772 2.1268 28 1 5.1450 0.7757 1.2617 29 1 3.6934 1.2496 0.3472 30 1 3.7356 -2.4228 2.5419 31 1 5.1696 -1.3685 2.5431 32 1 3.6971 -0.8691 3.4094 33 1 1.6968 -1.7573 1.2351 34 1 1.6583 -0.2246 2.1389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306267009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:06 Heat of formation + Delta-G solvation = -3.429838 kcal Electronic energy + Delta-G solvation = -13627.970632 eV Core-core repulsion = 11560.472508 eV Total energy + Delta-G solvation = -2067.498125 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.51944 -33.72687 -33.30790 -30.50870 -26.56927 -26.12044 -25.59188 -25.20427 -21.41365 -19.78718 -17.75653 -16.51681 -14.79593 -14.39733 -13.96685 -13.65661 -13.39402 -13.07541 -12.53639 -12.09975 -11.83794 -11.62437 -11.34849 -11.15809 -10.92066 -10.78312 -10.71643 -10.47817 -10.26741 -9.97641 -9.82370 -9.62279 -9.29264 -9.21526 -8.38268 -6.56696 -5.71867 -3.13201 3.41618 3.47260 3.48713 4.54772 5.33252 5.39486 5.55327 5.60263 5.61920 5.75360 5.97320 6.09024 6.21259 6.25889 6.33241 6.34307 6.40348 6.47383 6.52318 6.58384 6.66665 6.74520 6.85116 7.04532 7.09108 7.15933 7.22655 7.49327 7.75845 7.86175 8.52514 9.28956 9.93256 10.50732 11.36239 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038275 B = 0.013261 C = 0.011352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.364664 B = 2111.010250 C = 2465.959187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 H 0.069 0.931 4 C 0.152 3.848 5 N -0.590 5.590 6 C -0.249 4.249 7 H 0.063 0.937 8 C 0.002 3.998 9 N -0.903 5.903 10 Si 0.899 3.101 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.185 3.815 15 C -0.095 4.095 16 C -0.124 4.124 17 C -0.133 4.133 18 C -0.090 4.090 19 H 0.044 0.956 20 H 0.049 0.951 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.015 0.985 24 H 0.253 0.747 25 H 0.086 0.914 26 H 0.014 0.986 27 H 0.030 0.970 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 3.154 6.152 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 H 0.087 0.913 4 C 0.026 3.974 5 N -0.312 5.312 6 C -0.379 4.379 7 H 0.081 0.919 8 C -0.196 4.196 9 N -0.548 5.548 10 Si 0.729 3.271 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.059 3.941 15 C -0.097 4.097 16 C -0.181 4.181 17 C -0.191 4.191 18 C -0.128 4.128 19 H 0.063 0.937 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.685 3.046 6.098 8.876 hybrid contribution 0.704 0.352 -0.505 0.935 sum -4.981 3.398 5.593 8.224 Atomic orbital electron populations 1.21775 0.96602 1.01017 1.00545 1.21710 0.93675 1.00531 0.97463 0.91311 1.20933 0.85858 0.96318 0.94339 1.44013 0.99338 1.71479 1.16354 1.19127 0.98216 1.12098 1.08412 0.91902 1.24998 0.99885 0.95377 0.99367 1.70034 1.21871 1.14627 1.48246 0.86416 0.81216 0.79172 0.80274 1.21088 1.21699 1.20965 1.20809 0.99092 0.92329 0.81888 1.21246 0.94748 0.96543 0.97162 1.21699 1.00185 0.95816 1.00411 1.21759 1.00731 0.99767 0.96848 1.21476 0.95496 0.99413 0.96411 0.93662 0.93236 0.93238 0.93208 0.96739 0.93698 0.89573 0.96789 0.95083 0.93673 0.91613 0.93349 0.93040 0.93984 0.93083 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.20 37.16 0.34 -1.74 16 2 C -0.11 -2.05 2.53 -90.51 -0.23 -2.28 16 3 H 0.07 1.29 6.34 -51.93 -0.33 0.96 16 4 C 0.15 3.30 5.80 -3.71 -0.02 3.27 16 5 N -0.59 -15.02 2.43 -172.32 -0.42 -15.44 16 6 C -0.25 -6.91 9.59 -15.06 -0.14 -7.06 16 7 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 8 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 9 N -0.90 -26.59 11.19 55.49 0.62 -25.97 16 10 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.18 4.49 3.99 -3.71 -0.01 4.48 16 15 C -0.10 -1.86 0.77 -154.39 -0.12 -1.98 16 16 C -0.12 -2.37 7.98 37.16 0.30 -2.08 16 17 C -0.13 -2.27 8.48 37.16 0.32 -1.95 16 18 C -0.09 -1.61 3.99 -26.69 -0.11 -1.72 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 26 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.37 5.97 -51.93 -0.31 1.06 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 261.95 15.07 3.95 3.95 Total: -1.00 -28.84 261.95 -6.63 -35.48 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -5.99 Total: -3.90 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 0.23 Total: -11.08 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.20 Total: -41.41 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.84 -6.63 -35.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306267009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.046 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds