Wall clock time and date at job start Sun Mar 29 2020 21:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52188 * 2 1 4 4 C 1.53188 * 109.49562 * 239.92454 * 2 1 3 5 5 N 1.46926 * 108.77621 * 185.41079 * 4 2 1 6 6 C 1.36937 * 120.63483 * 233.58812 * 5 4 2 7 7 H 1.08000 * 120.00005 * 27.69422 * 6 5 4 8 8 C 1.38816 * 120.00323 * 207.69866 * 6 5 4 9 9 N 1.31620 * 119.99791 * 17.35473 * 8 6 5 10 10 Si 1.86800 * 120.00086 * 197.35012 * 8 6 5 11 11 H 1.48497 * 109.46819 * 59.99959 * 10 8 6 12 12 H 1.48496 * 109.46830 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47148 * 299.99810 * 10 8 6 14 14 C 1.46926 * 118.73812 * 53.60636 * 5 4 2 15 15 C 1.53188 * 108.77610 * 306.39243 * 14 5 4 16 16 C 1.52997 * 109.49884 * 294.68324 * 15 14 5 17 17 C 1.53005 * 109.52473 * 174.59975 * 15 14 5 18 18 C 1.53032 * 109.50073 * 120.08532 * 2 1 3 19 19 H 1.08999 * 109.46964 * 299.91438 * 1 2 3 20 20 H 1.09002 * 109.47204 * 59.91768 * 1 2 3 21 21 H 1.09004 * 109.46993 * 179.91803 * 1 2 3 22 22 H 1.09000 * 109.59201 * 65.62704 * 4 2 1 23 23 H 1.08999 * 109.58851 * 305.19504 * 4 2 1 24 24 H 0.97002 * 119.99650 * 180.02562 * 9 8 6 25 25 H 1.09000 * 109.58743 * 186.60367 * 14 5 4 26 26 H 1.09008 * 109.58704 * 66.18054 * 14 5 4 27 27 H 1.09005 * 109.47423 * 179.83462 * 16 15 14 28 28 H 1.09001 * 109.46888 * 299.83751 * 16 15 14 29 29 H 1.08997 * 109.47048 * 59.83657 * 16 15 14 30 30 H 1.08991 * 109.47034 * 300.14563 * 17 15 14 31 31 H 1.09001 * 109.46802 * 60.15026 * 17 15 14 32 32 H 1.09004 * 109.46980 * 180.14477 * 17 15 14 33 33 H 1.08996 * 109.46273 * 61.29468 * 18 2 1 34 34 H 1.09007 * 109.46266 * 301.33616 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2496 5 7 3.5046 -0.8290 -1.1697 6 6 4.2935 -0.3791 -2.1946 7 1 3.9467 0.4209 -2.8319 8 6 5.5391 -0.9512 -2.4143 9 7 5.8278 -2.1219 -1.8867 10 14 6.8052 -0.0595 -3.4590 11 1 7.1178 1.2550 -2.8431 12 1 8.0431 -0.8757 -3.5402 13 1 6.2609 0.1505 -4.8246 14 6 4.1053 -1.4266 0.0306 15 6 3.5709 -0.6950 1.2658 16 6 4.0552 0.7562 1.2492 17 6 4.0799 -1.3888 2.5310 18 6 2.0409 -0.7231 1.2482 19 1 -0.3633 0.5125 0.8907 20 1 -0.3634 0.5151 -0.8893 21 1 -0.3633 -1.0277 -0.0015 22 1 1.7638 -0.1578 -2.1389 23 1 1.6053 -1.7215 -1.2981 24 1 6.6983 -2.5215 -2.0400 25 1 5.1896 -1.3245 -0.0140 26 1 3.8376 -2.4818 0.0865 27 1 3.6724 1.2772 2.1268 28 1 5.1450 0.7757 1.2617 29 1 3.6934 1.2496 0.3472 30 1 3.7356 -2.4228 2.5419 31 1 5.1696 -1.3685 2.5431 32 1 3.6971 -0.8691 3.4094 33 1 1.6968 -1.7573 1.2351 34 1 1.6583 -0.2246 2.1389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306267009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:06 Heat of formation + Delta-G solvation = -19.318909 kcal Electronic energy + Delta-G solvation = -13628.659634 eV Core-core repulsion = 11560.472508 eV Total energy + Delta-G solvation = -2068.187126 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.16413 -35.64204 -34.83077 -32.49764 -28.05073 -27.65565 -27.24656 -27.07511 -23.31390 -21.29412 -19.45818 -18.49314 -16.79791 -15.92610 -15.71046 -15.36871 -15.06818 -14.71202 -14.18328 -13.67730 -13.33365 -13.04582 -12.92311 -12.75144 -12.65130 -12.47488 -12.40465 -12.22788 -12.11878 -11.79340 -11.44963 -11.26301 -10.94253 -10.83052 -10.48869 -8.62530 -7.84883 -5.29643 1.44883 1.47359 1.54086 2.51485 3.28064 3.73006 3.96168 4.09968 4.14231 4.29205 4.52678 4.67550 4.78366 4.85007 4.88915 4.91324 4.94641 5.04651 5.10160 5.11475 5.21346 5.26614 5.30934 5.39212 5.57150 5.58609 5.60528 5.62445 5.78517 5.86279 6.41078 7.17273 7.90212 8.42228 9.20518 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038275 B = 0.013261 C = 0.011352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.364664 B = 2111.010250 C = 2465.959187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 H 0.064 0.936 4 C 0.147 3.853 5 N -0.607 5.607 6 C -0.259 4.259 7 H 0.063 0.937 8 C -0.050 4.050 9 N -0.936 5.936 10 Si 0.963 3.037 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.275 1.275 14 C 0.194 3.806 15 C -0.093 4.093 16 C -0.116 4.116 17 C -0.129 4.129 18 C -0.087 4.087 19 H 0.069 0.931 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.006 0.994 24 H 0.249 0.751 25 H 0.049 0.951 26 H -0.016 1.016 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 4.486 7.342 11.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 H 0.083 0.917 4 C 0.021 3.979 5 N -0.330 5.330 6 C -0.389 4.389 7 H 0.081 0.919 8 C -0.246 4.246 9 N -0.582 5.582 10 Si 0.791 3.209 11 H -0.204 1.204 12 H -0.220 1.220 13 H -0.201 1.201 14 C 0.068 3.932 15 C -0.095 4.095 16 C -0.174 4.174 17 C -0.186 4.186 18 C -0.124 4.124 19 H 0.088 0.912 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.024 0.976 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.002 0.998 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.940 4.393 7.294 10.985 hybrid contribution 1.045 -0.088 -0.903 1.384 sum -5.895 4.305 6.391 9.702 Atomic orbital electron populations 1.21707 0.93547 1.01777 1.02155 1.21585 0.96113 0.99449 0.95384 0.91738 1.21109 0.83836 0.96324 0.96589 1.44276 1.00891 1.71455 1.16362 1.19444 0.98864 1.11846 1.08765 0.91925 1.25743 1.01682 0.96050 1.01087 1.70197 1.21929 1.16105 1.49984 0.85405 0.78530 0.77965 0.78988 1.20447 1.22029 1.20118 1.20604 0.97087 0.91391 0.84098 1.21160 0.96288 0.96339 0.95674 1.21615 0.99257 0.95536 1.00962 1.21716 1.00306 0.99992 0.96615 1.21464 0.93742 0.99651 0.97551 0.91212 0.92541 0.92914 0.93535 0.97636 0.94236 0.93225 0.99840 0.91658 0.95163 0.93609 0.93260 0.93865 0.90785 0.93421 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.20 71.98 0.66 -2.82 16 2 C -0.11 -3.57 2.53 -10.72 -0.03 -3.60 16 3 H 0.06 2.27 6.34 -2.39 -0.02 2.26 16 4 C 0.15 6.35 5.80 86.36 0.50 6.85 16 5 N -0.61 -31.50 2.43 -699.10 -1.70 -33.20 16 6 C -0.26 -14.66 9.59 84.03 0.81 -13.86 16 7 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 8 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 9 N -0.94 -57.00 11.19 21.65 0.24 -56.76 16 10 Si 0.96 45.98 29.59 68.60 2.03 48.01 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 C 0.19 9.68 3.99 86.36 0.34 10.02 16 15 C -0.09 -3.52 0.77 -52.10 -0.04 -3.56 16 16 C -0.12 -4.27 7.98 71.98 0.57 -3.70 16 17 C -0.13 -4.12 8.48 71.98 0.61 -3.51 16 18 C -0.09 -2.84 3.99 30.62 0.12 -2.72 16 19 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 23 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 25 H 0.05 2.82 6.04 -2.39 -0.01 2.80 16 26 H -0.02 -0.90 8.14 -2.38 -0.02 -0.91 16 27 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.85 5.97 -2.39 -0.01 1.83 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -63.23 261.95 5.57 -57.65 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.03 Total: 3.67 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 3.97 Total: -19.37 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -1.46 Total: -89.96 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -63.23 5.57 -57.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306267009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.335 kcal (2) G-P(sol) polarization free energy of solvation -63.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds