Wall clock time and date at job start Sun Mar 29 2020 21:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.43700 * 2 1 4 4 C 1.54885 * 110.48559 * 122.54757 * 2 1 3 5 5 C 1.54888 * 102.75101 * 156.61858 * 4 2 1 6 6 C 1.54259 * 104.31331 * 321.98788 * 5 4 2 7 7 H 1.09001 * 110.03714 * 264.39135 * 6 5 4 8 8 N 1.46906 * 110.03186 * 142.96133 * 6 5 4 9 9 C 1.46890 * 111.00017 * 56.39479 * 8 6 5 10 10 C 1.46907 * 110.99890 * 180.35077 * 8 6 5 11 11 C 1.50690 * 109.46976 * 169.99941 * 10 8 6 12 12 H 1.07998 * 120.00407 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99889 * 179.97438 * 11 10 8 14 14 N 1.31507 * 120.00124 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99868 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47195 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46751 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.47004 * 240.00204 * 15 13 11 19 19 C 1.54221 * 106.42709 * 23.64241 * 6 5 4 20 20 H 1.08996 * 109.47188 * 298.91210 * 1 2 3 21 21 H 1.09001 * 109.46903 * 58.91007 * 1 2 3 22 22 H 1.09000 * 109.47501 * 178.90831 * 1 2 3 23 23 H 1.08999 * 110.75825 * 38.30066 * 4 2 1 24 24 H 1.09006 * 110.75771 * 274.93042 * 4 2 1 25 25 H 1.09001 * 110.48583 * 80.73689 * 5 4 2 26 26 H 1.09006 * 110.48833 * 203.24630 * 5 4 2 27 27 H 1.09002 * 109.47443 * 60.49619 * 9 8 6 28 28 H 1.09000 * 109.47154 * 180.48943 * 9 8 6 29 29 H 1.09000 * 109.47346 * 300.49331 * 9 8 6 30 30 H 1.09003 * 109.46894 * 290.00101 * 10 8 6 31 31 H 1.09003 * 109.47286 * 49.99755 * 10 8 6 32 32 H 0.96999 * 120.00647 * 180.02562 * 14 13 11 33 33 H 1.08997 * 110.00407 * 240.68894 * 19 6 5 34 34 H 1.09005 * 110.06322 * 119.30281 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0720 -0.7806 1.2230 5 6 3.4906 -1.1971 0.7614 6 6 3.3192 -1.5439 -0.7319 7 1 3.1718 -2.6172 -0.8516 8 7 4.5018 -1.1104 -1.4881 9 6 5.7259 -1.7088 -0.9394 10 6 4.3573 -1.4233 -2.9162 11 6 5.4624 -0.7535 -3.6914 12 1 6.1987 -0.1556 -3.1750 13 6 5.5340 -0.9049 -5.0600 14 7 4.6377 -1.6333 -5.6889 15 14 6.9035 -0.0740 -6.0211 16 1 7.7754 0.6826 -5.0869 17 1 7.7093 -1.1038 -6.7252 18 1 6.3150 0.8591 -7.0153 19 6 2.0699 -0.7804 -1.2163 20 1 -0.3633 0.4968 0.8995 21 1 -0.3633 0.5307 -0.8801 22 1 -0.3634 -1.0275 -0.0196 23 1 1.4580 -1.6584 1.4242 24 1 2.1252 -0.1357 2.1003 25 1 4.1897 -0.3698 0.8832 26 1 3.8324 -2.0694 1.3187 27 1 5.6590 -2.7950 -1.0017 28 1 6.5870 -1.3645 -1.5122 29 1 5.8403 -1.4110 0.1029 30 1 4.4152 -2.5023 -3.0594 31 1 3.3927 -1.0609 -3.2718 32 1 4.6883 -1.7401 -6.6517 33 1 1.3175 -1.4841 -1.5723 34 1 2.3404 -0.0883 -2.0138 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307483214.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:16 Heat of formation + Delta-G solvation = -17.298054 kcal Electronic energy + Delta-G solvation = -12969.363899 eV Core-core repulsion = 10901.264403 eV Total energy + Delta-G solvation = -2068.099496 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.55746 -35.17374 -32.46158 -30.25951 -28.20725 -27.12684 -24.52954 -23.99631 -21.20169 -19.79777 -18.59047 -16.38548 -15.61997 -14.71370 -14.66545 -13.99000 -13.24453 -13.19671 -13.01076 -12.50353 -11.94794 -11.70143 -11.54426 -11.14271 -10.95264 -10.77424 -10.49234 -10.48241 -10.31655 -10.24251 -10.10786 -10.06191 -9.64808 -9.09112 -8.39266 -7.13648 -5.98972 -3.99718 3.32835 3.40030 3.45232 4.45601 4.91005 4.98246 5.04700 5.26549 5.36774 5.63566 5.69396 5.82094 5.90420 5.97901 6.03880 6.14602 6.16832 6.23625 6.30742 6.33059 6.39765 6.53674 6.68044 6.76508 6.80182 6.88668 7.39190 7.42434 7.86915 8.18211 8.29156 8.64386 9.08765 9.64186 11.11975 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.049776 B = 0.008614 C = 0.007871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.389843 B = 3249.862880 C = 3556.588963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.117 4.117 6 C 0.080 3.920 7 H 0.028 0.972 8 N -0.535 5.535 9 C 0.037 3.963 10 C 0.189 3.811 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.112 4.112 20 H 0.048 0.952 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.007 0.993 28 H 0.072 0.928 29 H 0.046 0.954 30 H -0.013 1.013 31 H 0.034 0.966 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 1.153 11.073 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.029 4.029 7 H 0.046 0.954 8 N -0.260 5.260 9 C -0.112 4.112 10 C 0.064 3.936 11 C -0.544 4.544 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.539 5.539 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.150 4.150 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.026 0.974 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.005 0.995 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.812 1.598 10.926 12.045 hybrid contribution 0.645 -0.598 -0.813 1.198 sum -4.167 1.000 10.114 10.984 Atomic orbital electron populations 1.21804 0.95704 1.01385 1.01078 1.21928 0.94617 0.99545 0.95215 0.90843 1.22519 0.96445 0.99323 0.97251 1.22447 0.96858 1.00838 0.95332 1.22247 0.91896 0.95951 0.92822 0.95442 1.62289 1.00182 1.58168 1.05347 1.22201 0.94798 0.95676 0.98498 1.19768 0.98092 0.94355 0.81380 1.21233 1.11442 1.30122 0.91570 0.91875 1.24996 0.96360 0.95588 0.97783 1.69970 1.35129 1.39973 1.08840 0.86464 0.81974 0.79211 0.79909 1.19684 1.21165 1.21034 1.22334 0.95692 0.99111 0.97847 0.93244 0.92813 0.92948 0.92034 0.92203 0.90689 0.92764 0.97403 0.90922 0.93546 0.99492 0.94750 0.93060 0.92571 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.12 37.16 0.34 -1.39 16 2 C -0.09 -1.36 3.46 -88.96 -0.31 -1.66 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.12 -1.55 6.33 -24.74 -0.16 -1.71 16 5 C -0.12 -1.80 5.16 -25.08 -0.13 -1.93 16 6 C 0.08 1.51 2.68 -66.41 -0.18 1.33 16 7 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 8 N -0.54 -11.97 4.52 -234.77 -1.06 -13.03 16 9 C 0.04 0.75 9.07 60.06 0.54 1.29 16 10 C 0.19 5.06 4.49 -4.98 -0.02 5.04 16 11 C -0.50 -14.49 8.47 -34.44 -0.29 -14.78 16 12 H 0.06 1.80 7.12 -52.49 -0.37 1.42 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 15 Si 0.90 21.95 29.54 -169.99 -5.02 16.92 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.11 -1.99 5.40 -25.43 -0.14 -2.13 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 23 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.20 7.49 -51.93 -0.39 0.81 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.07 1.57 6.77 -51.93 -0.35 1.22 16 29 H 0.05 0.80 6.67 -51.93 -0.35 0.46 16 30 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 31 H 0.03 0.97 6.29 -51.93 -0.33 0.64 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 33 H 0.06 0.96 7.81 -51.93 -0.41 0.55 16 34 H 0.08 1.67 6.66 -51.93 -0.35 1.33 16 LS Contribution 266.72 15.07 4.02 4.02 Total: -1.00 -29.76 266.72 -7.66 -37.42 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.89 Total: -4.45 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -0.44 Total: -14.48 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: -0.33 Total: -39.43 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.76 -7.66 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307483214.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.121 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds