Wall clock time and date at job start Sun Mar 29 2020 21:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.04990 * 2 1 4 4 C 1.53875 * 110.03412 * 121.41398 * 2 1 3 5 5 C 1.54270 * 106.59317 * 119.28757 * 4 2 1 6 6 C 1.54882 * 104.19958 * 23.61425 * 5 4 2 7 7 H 1.08999 * 110.91728 * 80.43749 * 6 5 4 8 8 N 1.46897 * 110.75921 * 203.74392 * 6 5 4 9 9 C 1.46901 * 111.00356 * 169.37400 * 8 6 5 10 10 C 1.46904 * 110.99843 * 293.32637 * 8 6 5 11 11 C 1.50701 * 109.47195 * 170.00190 * 10 8 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 8 13 13 C 1.37871 * 119.99694 * 180.27796 * 11 10 8 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48494 * 109.47230 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47301 * 119.99669 * 15 13 11 18 18 H 1.48498 * 109.47430 * 239.99516 * 15 13 11 19 19 C 1.54259 * 110.03455 * 238.58849 * 2 1 3 20 20 H 1.09001 * 109.46700 * 181.41954 * 1 2 3 21 21 H 1.09002 * 109.46990 * 301.41293 * 1 2 3 22 22 H 1.08997 * 109.47217 * 61.41925 * 1 2 3 23 23 H 1.08998 * 110.03527 * 238.57082 * 4 2 1 24 24 H 1.09001 * 110.03269 * 359.95688 * 4 2 1 25 25 H 1.09000 * 110.48931 * 264.92928 * 5 4 2 26 26 H 1.09001 * 110.48377 * 142.28790 * 5 4 2 27 27 H 1.09002 * 109.47259 * 183.95541 * 9 8 6 28 28 H 1.09003 * 109.46525 * 303.95020 * 9 8 6 29 29 H 1.08997 * 109.47311 * 63.94656 * 9 8 6 30 30 H 1.09000 * 109.47038 * 49.99333 * 10 8 6 31 31 H 1.09007 * 109.46566 * 289.99865 * 10 8 6 32 32 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 33 33 H 1.08998 * 110.48953 * 98.42142 * 19 2 1 34 34 H 1.09007 * 110.48781 * 335.77683 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0571 -0.7535 1.2337 5 6 2.8875 -1.9405 0.7034 6 6 3.3138 -1.5006 -0.7191 7 1 4.1718 -0.8296 -0.6782 8 7 3.6087 -2.6691 -1.5590 9 6 3.7671 -2.2794 -2.9665 10 6 4.7987 -3.3801 -1.0726 11 6 4.9288 -4.6955 -1.7965 12 1 4.2001 -4.9755 -2.5429 13 6 5.9745 -5.5442 -1.5014 14 7 6.8616 -5.2034 -0.5922 15 14 6.1314 -7.1781 -2.3931 16 1 5.0144 -7.3232 -3.3607 17 1 7.4256 -7.2231 -3.1200 18 1 6.0788 -8.2872 -1.4070 19 6 2.0585 -0.7553 -1.2368 20 1 -0.3633 -1.0274 0.0255 21 1 -0.3633 0.5356 0.8771 22 1 -0.3633 0.4916 -0.9024 23 1 2.6867 -0.0953 1.8325 24 1 1.2230 -1.1185 1.8329 25 1 2.2773 -2.8425 0.6570 26 1 3.7638 -2.1035 1.3308 27 1 3.9149 -3.1710 -3.5760 28 1 2.8720 -1.7550 -3.3011 29 1 4.6315 -1.6232 -3.0668 30 1 4.7009 -3.5623 -0.0024 31 1 5.6853 -2.7739 -1.2585 32 1 7.5971 -5.8006 -0.3844 33 1 2.3297 -0.0534 -2.0254 34 1 1.3143 -1.4660 -1.5967 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307483219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:18 Heat of formation + Delta-G solvation = -19.469564 kcal Electronic energy + Delta-G solvation = -12929.998146 eV Core-core repulsion = 10861.804487 eV Total energy + Delta-G solvation = -2068.193659 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.56091 -35.25803 -32.42738 -30.26078 -28.37675 -26.61577 -25.48134 -23.45228 -21.36855 -19.31776 -18.97044 -16.33775 -15.66823 -15.01333 -14.47789 -13.82116 -13.49782 -13.08861 -12.74885 -12.51126 -12.27903 -11.90643 -11.54796 -11.10976 -10.94548 -10.76657 -10.55926 -10.40288 -10.32659 -10.31256 -10.16069 -10.03409 -9.62260 -9.09213 -8.39247 -7.15048 -5.98763 -3.99549 3.33098 3.40282 3.45499 4.45609 4.86333 4.90044 5.01845 5.30341 5.37480 5.61217 5.64166 5.75329 5.84483 5.89712 6.02246 6.13216 6.18551 6.20093 6.28970 6.33262 6.39765 6.49016 6.69700 6.71245 6.78012 6.87394 7.40979 7.41677 7.86785 8.17208 8.29073 8.64134 9.08929 9.64476 11.12314 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.062226 B = 0.007950 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.863691 B = 3521.119163 C = 3700.716384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.064 0.936 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.078 3.922 7 H 0.033 0.967 8 N -0.535 5.535 9 C 0.038 3.962 10 C 0.191 3.809 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.053 3.947 14 N -0.900 5.900 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.111 4.111 20 H 0.056 0.944 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.008 0.992 30 H 0.033 0.967 31 H -0.012 1.012 32 H 0.260 0.740 33 H 0.054 0.946 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.129 8.904 0.789 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.083 0.917 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.031 4.031 7 H 0.051 0.949 8 N -0.259 5.259 9 C -0.111 4.111 10 C 0.066 3.934 11 C -0.543 4.543 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.149 4.149 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.051 0.949 31 H 0.005 0.995 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.364 8.510 0.905 12.686 hybrid contribution 1.023 -0.334 -0.447 1.166 sum -8.341 8.176 0.458 11.689 Atomic orbital electron populations 1.21863 0.95385 1.01748 1.00872 1.21701 0.95329 0.98939 0.95586 0.91744 1.22206 0.99243 0.97333 0.96906 1.22313 0.99365 0.97818 0.95379 1.22540 0.95322 0.91672 0.93589 0.94876 1.62220 1.41395 1.21086 1.01187 1.22197 0.97708 0.99927 0.91241 1.19749 0.84463 0.92786 0.96416 1.21235 1.09493 1.02134 1.21461 0.91871 1.24993 0.95793 0.98487 0.95455 1.69972 1.14364 1.37120 1.32545 0.86459 0.77822 0.83673 0.79574 1.19683 1.21159 1.21037 1.22495 0.97888 0.98210 0.96293 0.92464 0.93218 0.93117 0.92486 0.92027 0.90645 0.92001 0.91046 0.93569 0.97307 0.94908 0.99455 0.93055 0.92689 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.84 37.16 0.33 -1.25 16 2 C -0.10 -1.26 3.50 -89.51 -0.31 -1.57 16 3 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 4 C -0.12 -1.64 6.46 -25.61 -0.17 -1.81 16 5 C -0.11 -1.95 5.49 -25.07 -0.14 -2.08 16 6 C 0.08 1.47 2.59 -65.72 -0.17 1.30 16 7 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 8 N -0.53 -11.97 4.65 -233.93 -1.09 -13.05 16 9 C 0.04 0.77 9.12 60.07 0.55 1.32 16 10 C 0.19 5.12 4.62 -4.97 -0.02 5.10 16 11 C -0.50 -14.50 8.51 -34.44 -0.29 -14.80 16 12 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 15 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.11 -1.70 4.50 -25.07 -0.11 -1.81 16 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 25 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.06 1.14 7.75 -51.93 -0.40 0.74 16 27 H 0.07 1.53 6.86 -51.93 -0.36 1.18 16 28 H 0.05 0.80 6.73 -51.93 -0.35 0.45 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.03 0.93 6.85 -51.93 -0.36 0.57 16 31 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 34 H 0.07 1.19 7.85 -51.92 -0.41 0.78 16 LS Contribution 268.15 15.07 4.04 4.04 Total: -1.00 -29.85 268.15 -7.76 -37.61 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -5.99 Total: -4.88 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -0.44 Total: -14.16 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.35 Total: -39.56 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.85 -7.76 -37.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307483219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.141 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds