Wall clock time and date at job start Sun Mar 29 2020 21:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.87256 * 2 1 4 4 C 1.54324 * 109.88380 * 238.98546 * 2 1 3 5 5 C 1.55149 * 102.94305 * 218.23427 * 4 2 1 6 6 C 1.54906 * 101.61945 * 35.48249 * 5 4 2 7 7 H 1.09002 * 110.36825 * 204.16842 * 6 5 4 8 8 C 1.53003 * 110.36587 * 81.84626 * 6 5 4 9 9 N 1.47022 * 110.01102 * 121.10003 * 2 1 3 10 10 C 1.34778 * 125.64891 * 298.39617 * 9 2 1 11 11 O 1.21693 * 119.99857 * 359.97438 * 10 9 2 12 12 C 1.46376 * 119.99823 * 180.02562 * 10 9 2 13 13 H 1.07997 * 119.99776 * 353.72269 * 12 10 9 14 14 C 1.40050 * 119.99945 * 173.73193 * 12 10 9 15 15 N 1.30675 * 119.99790 * 6.08446 * 14 12 10 16 16 Si 1.86798 * 120.00043 * 186.08315 * 14 12 10 17 17 H 1.48504 * 109.46953 * 94.98476 * 16 14 12 18 18 H 1.48504 * 109.47112 * 214.98241 * 16 14 12 19 19 H 1.48496 * 109.47285 * 334.98292 * 16 14 12 20 20 H 1.08995 * 109.47246 * 179.56548 * 1 2 3 21 21 H 1.09000 * 109.47002 * 299.56074 * 1 2 3 22 22 H 1.08995 * 109.47482 * 59.55716 * 1 2 3 23 23 H 1.09005 * 110.71952 * 99.86587 * 4 2 1 24 24 H 1.08997 * 110.87066 * 336.67203 * 4 2 1 25 25 H 1.09007 * 111.00582 * 153.57658 * 5 4 2 26 26 H 1.08999 * 111.00594 * 277.38915 * 5 4 2 27 27 H 1.08998 * 109.47312 * 61.45868 * 8 6 5 28 28 H 1.09008 * 109.46878 * 181.45807 * 8 6 5 29 29 H 1.09004 * 109.46901 * 301.45403 * 8 6 5 30 30 H 0.97006 * 119.99621 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0548 -0.7478 -1.2438 5 6 3.2899 -1.5100 -0.6955 6 6 2.8206 -1.8769 0.7345 7 1 3.6794 -2.0294 1.3882 8 6 1.9452 -3.1314 0.7021 9 7 2.0331 -0.7136 1.1829 10 6 1.8125 -0.3619 2.4652 11 8 1.1458 0.6238 2.7197 12 6 2.3758 -1.1650 3.5516 13 1 2.8814 -2.0934 3.3306 14 6 2.2590 -0.7296 4.8775 15 7 1.5463 0.3295 5.1570 16 14 3.1219 -1.6627 6.2465 17 1 4.4351 -1.0283 6.5265 18 1 2.2846 -1.6293 7.4725 19 1 3.3321 -3.0721 5.8288 20 1 -0.3633 -1.0276 -0.0078 21 1 -0.3633 0.5070 0.8939 22 1 -0.3634 0.5207 -0.8859 23 1 2.3503 -0.0431 -2.0212 24 1 1.3075 -1.4454 -1.6215 25 1 3.4888 -2.4061 -1.2834 26 1 4.1665 -0.8629 -0.6649 27 1 2.5253 -3.9694 0.3158 28 1 1.6023 -3.3612 1.7109 29 1 1.0843 -2.9571 0.0566 30 1 1.4658 0.6313 6.0754 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307631437.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:56 Heat of formation + Delta-G solvation = -48.479351 kcal Electronic energy + Delta-G solvation = -13126.598815 eV Core-core repulsion = 10921.314103 eV Total energy + Delta-G solvation = -2205.284713 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.86833 -35.70210 -32.54781 -31.58802 -30.25174 -27.74235 -26.09304 -23.69338 -21.63598 -19.99934 -18.54704 -16.53251 -15.70297 -14.97531 -14.19183 -13.50127 -13.16009 -13.05305 -12.70976 -12.20052 -11.90246 -11.84901 -11.60237 -11.34224 -11.17600 -10.81035 -10.72970 -10.33320 -10.16913 -10.15734 -10.06915 -9.79095 -8.81467 -7.53337 -7.13402 -6.16609 -4.59159 3.14963 3.22181 3.25592 4.11076 4.55973 4.64514 5.15515 5.23569 5.35715 5.76898 5.83411 5.89794 6.00013 6.08101 6.12032 6.14851 6.25377 6.35006 6.43528 6.52632 6.70631 6.85739 6.94921 7.07133 7.47821 7.55063 8.18307 8.50253 9.06108 9.58835 10.62499 10.82462 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045913 B = 0.012386 C = 0.010577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.704828 B = 2260.093066 C = 2646.567273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.054 0.946 4 C -0.127 4.127 5 C -0.131 4.131 6 C 0.141 3.859 7 H 0.076 0.924 8 C -0.156 4.156 9 N -0.635 5.635 10 C 0.574 3.426 11 O -0.576 6.576 12 C -0.539 4.539 13 H 0.069 0.931 14 C 0.087 3.913 15 N -0.769 5.769 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.046 0.954 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -5.221 -8.684 10.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.072 0.928 4 C -0.165 4.165 5 C -0.169 4.169 6 C 0.035 3.965 7 H 0.095 0.905 8 C -0.215 4.215 9 N -0.374 5.374 10 C 0.380 3.620 11 O -0.458 6.458 12 C -0.576 4.576 13 H 0.087 0.913 14 C -0.132 4.132 15 N -0.398 5.398 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 H 0.065 0.935 21 H 0.090 0.910 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.214 -4.501 -8.292 9.691 hybrid contribution 0.432 -0.525 0.637 0.932 sum 2.647 -5.026 -7.655 9.532 Atomic orbital electron populations 1.22113 0.96413 1.01122 1.01749 1.21126 0.93611 0.95782 0.85909 0.92756 1.22673 0.97649 0.99104 0.97037 1.22804 0.97662 0.99858 0.96574 1.21441 0.94113 0.87297 0.93639 0.90546 1.22142 0.99829 0.97056 1.02443 1.48851 1.55895 1.27818 1.04874 1.17991 0.80164 0.84885 0.78955 1.90590 1.43341 1.30006 1.81868 1.20909 1.38645 1.08072 0.89964 0.91261 1.25719 0.93637 0.94450 0.99407 1.70035 1.29949 1.20233 1.19557 0.86398 0.79655 0.80542 0.80425 1.19828 1.20482 1.18871 0.93480 0.90973 0.93731 0.91569 0.91375 0.91200 0.91377 0.93294 0.91810 0.93273 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.13 37.16 0.34 -2.70 16 2 C 0.14 2.82 3.45 -66.95 -0.23 2.59 16 3 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 4 C -0.13 -1.92 6.09 -24.90 -0.15 -2.07 16 5 C -0.13 -1.96 6.56 -24.59 -0.16 -2.12 16 6 C 0.14 2.65 2.93 -66.39 -0.19 2.46 16 7 H 0.08 1.51 7.24 -51.93 -0.38 1.13 16 8 C -0.16 -2.66 9.49 37.16 0.35 -2.31 16 9 N -0.64 -14.85 2.72 -157.20 -0.43 -15.27 16 10 C 0.57 16.66 7.57 -12.99 -0.10 16.56 16 11 O -0.58 -18.86 14.08 5.19 0.07 -18.79 16 12 C -0.54 -15.38 8.93 -35.63 -0.32 -15.69 16 13 H 0.07 1.83 6.75 -52.49 -0.35 1.47 16 14 C 0.09 2.46 5.49 -17.36 -0.10 2.37 16 15 N -0.77 -23.29 11.85 55.55 0.66 -22.64 16 16 Si 0.91 20.36 29.56 -169.99 -5.03 15.33 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 20 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.07 1.69 6.87 -51.93 -0.36 1.33 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.96 7.48 -51.93 -0.39 0.57 16 25 H 0.07 0.86 8.04 -51.92 -0.42 0.45 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 29 H 0.05 0.81 7.47 -51.93 -0.39 0.43 16 30 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 248.32 15.07 3.74 3.74 Total: -1.00 -33.38 248.32 -5.91 -39.29 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.37 Total: -0.75 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.56 Total: -0.92 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.23 Total: -37.91 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.07 Total: -18.79 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.38 -5.91 -39.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307631437.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.190 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds