Wall clock time and date at job start Sun Mar 29 2020 21:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 108.45895 * 2 1 4 4 C 1.52526 * 108.52182 * 242.28875 * 2 1 3 5 5 C 1.50121 * 105.41549 * 149.34808 * 4 2 1 6 6 C 1.54846 * 110.81598 * 97.68379 * 5 4 2 7 7 C 1.54905 * 110.13981 * 321.13452 * 6 5 4 8 8 H 1.08995 * 107.99776 * 80.22895 * 7 6 5 9 9 C 1.52998 * 108.15863 * 196.92310 * 7 6 5 10 10 N 1.43437 * 116.07726 * 318.63758 * 7 6 5 11 11 C 1.36928 * 120.53954 * 271.54085 * 10 7 6 12 12 H 1.08002 * 120.00385 * 335.78037 * 11 10 7 13 13 C 1.38815 * 120.00364 * 155.49664 * 11 10 7 14 14 N 1.31624 * 119.99611 * 341.69317 * 13 11 10 15 15 Si 1.86797 * 120.00193 * 161.68679 * 13 11 10 16 16 H 1.48504 * 109.46997 * 90.00502 * 15 13 11 17 17 H 1.48504 * 109.46987 * 210.00520 * 15 13 11 18 18 H 1.48499 * 109.47448 * 330.00419 * 15 13 11 19 19 C 1.46755 * 108.45998 * 117.64466 * 2 1 3 20 20 H 1.08990 * 109.46963 * 177.71384 * 1 2 3 21 21 H 1.09003 * 109.46775 * 297.71299 * 1 2 3 22 22 H 1.08997 * 109.47357 * 57.71044 * 1 2 3 23 23 H 1.09005 * 110.24747 * 30.37850 * 4 2 1 24 24 H 1.08998 * 110.24863 * 268.32014 * 4 2 1 25 25 H 1.08999 * 109.20991 * 337.33945 * 5 4 2 26 26 H 1.09006 * 109.21196 * 218.02688 * 5 4 2 27 27 H 1.08996 * 109.36048 * 200.92919 * 6 5 4 28 28 H 1.08994 * 109.35958 * 81.33714 * 6 5 4 29 29 H 1.08995 * 109.47010 * 186.47444 * 9 7 6 30 30 H 1.08993 * 109.47288 * 306.47871 * 9 7 6 31 31 H 1.08998 * 109.47064 * 66.47561 * 9 7 6 32 32 H 0.96997 * 119.99975 * 179.97438 * 14 13 11 33 33 H 1.09012 * 109.95204 * 60.32186 * 19 2 1 34 34 H 1.08995 * 110.00396 * 299.16480 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8752 1.0340 0.0000 4 6 2.0145 -0.6725 -1.2804 5 6 3.3218 -0.0114 -1.6083 6 6 4.5117 -0.8655 -1.1059 7 6 4.1756 -1.4909 0.2708 8 1 3.5536 -2.3693 0.0988 9 6 5.4831 -1.9550 0.9157 10 7 3.4961 -0.6374 1.2021 11 6 4.2050 0.1677 2.0530 12 1 5.2196 -0.0889 2.3198 13 6 3.6216 1.3171 2.5684 14 7 2.5580 1.8320 1.9886 15 14 4.3460 2.1330 4.0846 16 1 5.3623 3.1335 3.6706 17 1 3.2658 2.8105 4.8459 18 1 4.9856 1.1036 4.9428 19 6 1.9947 -0.6459 1.2331 20 1 -0.3633 -1.0268 -0.0410 21 1 -0.3633 0.4779 0.9098 22 1 -0.3634 0.5490 -0.8687 23 1 1.2978 -0.5113 -2.0857 24 1 2.1628 -1.7394 -1.1133 25 1 3.3575 0.9685 -1.1323 26 1 3.4001 0.1124 -2.6885 27 1 5.3948 -0.2338 -1.0099 28 1 4.7147 -1.6601 -1.8238 29 1 5.2620 -2.5013 1.8326 30 1 6.0179 -2.6064 0.2246 31 1 6.1008 -1.0879 1.1494 32 1 2.1502 2.6350 2.3489 33 1 1.6312 -1.6728 1.2749 34 1 1.6393 -0.0911 2.1014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307674402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:16 Heat of formation + Delta-G solvation = 12.271894 kcal Electronic energy + Delta-G solvation = -13846.552483 eV Core-core repulsion = 11779.735237 eV Total energy + Delta-G solvation = -2066.817246 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.25215 -34.03231 -33.01525 -30.73063 -28.36007 -25.72098 -25.15700 -23.21238 -21.42516 -19.22885 -18.52792 -16.06971 -15.18841 -14.12198 -14.01935 -13.77823 -13.42658 -12.88157 -12.28261 -11.85165 -11.64308 -11.43825 -11.19540 -11.07321 -10.85023 -10.60904 -10.47105 -10.23229 -10.01545 -9.68642 -9.53726 -9.19054 -9.07725 -9.06190 -8.34418 -6.57349 -5.69345 -3.09069 3.41380 3.49044 3.51376 4.57230 5.41399 5.44957 5.77177 5.80057 5.91944 6.14697 6.17687 6.25784 6.35972 6.42898 6.52753 6.55545 6.65117 6.71238 6.77965 6.85724 6.88958 7.00423 7.11376 7.20152 7.29366 7.37754 7.48803 7.75284 7.86832 8.12841 8.52997 9.29656 9.97882 10.52035 11.37487 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031512 B = 0.016906 C = 0.012728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.345947 B = 1655.809421 C = 2199.387523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 H 0.110 0.890 4 C -0.109 4.109 5 C -0.106 4.106 6 C -0.136 4.136 7 C 0.181 3.819 8 H 0.032 0.968 9 C -0.151 4.151 10 N -0.584 5.584 11 C -0.245 4.245 12 H 0.072 0.928 13 C 0.000 4.000 14 N -0.900 5.900 15 Si 0.896 3.104 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.282 1.282 19 C 0.175 3.825 20 H 0.033 0.967 21 H 0.048 0.952 22 H 0.035 0.965 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.250 0.750 33 H 0.002 0.998 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.546 -4.398 -4.150 6.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 H 0.128 0.872 4 C -0.146 4.146 5 C -0.143 4.143 6 C -0.177 4.177 7 C 0.071 3.929 8 H 0.050 0.950 9 C -0.209 4.209 10 N -0.304 5.304 11 C -0.375 4.375 12 H 0.089 0.911 13 C -0.198 4.198 14 N -0.545 5.545 15 Si 0.727 3.273 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.208 1.208 19 C 0.051 3.949 20 H 0.052 0.948 21 H 0.067 0.933 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.020 0.980 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.632 -4.255 -4.056 5.912 hybrid contribution 0.350 0.632 0.637 0.963 sum -0.282 -3.622 -3.419 4.989 Atomic orbital electron populations 1.21906 0.98404 0.99267 1.00328 1.20821 0.92774 1.04290 0.94744 0.87236 1.21075 0.96445 0.99386 0.97738 1.21390 0.94790 1.00678 0.97479 1.22873 0.97741 0.98406 0.98670 1.19923 0.92205 0.92231 0.88505 0.94988 1.22153 0.98929 1.00308 0.99540 1.44231 1.01250 1.47285 1.37638 1.19256 0.98464 1.00925 1.18845 0.91081 1.24932 0.98763 0.96113 0.99976 1.69969 1.23880 1.21549 1.39128 0.86394 0.78045 0.79178 0.83732 1.21742 1.21781 1.20756 1.20256 0.82373 0.94485 0.97739 0.94773 0.93290 0.94560 0.93835 0.92954 0.90972 0.95225 0.93262 0.94227 0.93444 0.94813 0.92236 0.93962 0.97959 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.86 37.16 0.33 -2.33 16 2 C -0.11 -2.31 2.04 -93.85 -0.19 -2.50 16 3 H 0.11 2.77 5.22 -51.92 -0.27 2.50 16 4 C -0.11 -2.11 5.19 -28.41 -0.15 -2.26 16 5 C -0.11 -2.12 5.65 -27.19 -0.15 -2.28 16 6 C -0.14 -2.69 5.72 -24.75 -0.14 -2.83 16 7 C 0.18 3.86 2.25 -68.55 -0.15 3.70 16 8 H 0.03 0.67 6.87 -51.93 -0.36 0.31 16 9 C -0.15 -2.96 8.22 37.16 0.31 -2.65 16 10 N -0.58 -14.31 2.52 -167.11 -0.42 -14.73 16 11 C -0.25 -6.54 8.98 -15.06 -0.14 -6.68 16 12 H 0.07 1.88 5.85 -52.49 -0.31 1.57 16 13 C 0.00 -0.01 4.93 -17.43 -0.09 -0.09 16 14 N -0.90 -24.85 9.39 55.49 0.52 -24.33 16 15 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C 0.17 4.14 4.41 -4.97 -0.02 4.11 16 20 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 22 H 0.04 0.63 8.09 -51.93 -0.42 0.21 16 23 H 0.04 0.77 7.80 -51.93 -0.41 0.36 16 24 H 0.05 1.00 6.28 -51.93 -0.33 0.68 16 25 H 0.07 1.69 6.82 -51.93 -0.35 1.33 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.01 8.00 -51.93 -0.42 0.59 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.06 1.23 6.46 -51.93 -0.34 0.90 16 32 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.00 0.05 8.12 -51.92 -0.42 -0.37 16 34 H 0.09 2.28 6.12 -51.93 -0.32 1.97 16 LS Contribution 251.86 15.07 3.80 3.80 Total: -1.00 -26.86 251.86 -7.13 -33.99 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.60 Total: -1.49 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.40 Total: -13.80 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.10 Total: -39.06 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.86 -7.13 -33.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307674402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.261 kcal (2) G-P(sol) polarization free energy of solvation -26.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds