Wall clock time and date at job start Sun Mar 29 2020 21:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09001 * 109.43673 * 2 1 4 4 C 1.54863 * 109.44936 * 240.06306 * 2 1 3 5 5 C 1.47098 * 110.32380 * 168.69497 * 4 2 1 6 6 C 1.52573 * 114.32658 * 62.79999 * 5 4 2 7 7 C 1.50820 * 109.35615 * 274.98642 * 6 5 4 8 8 H 1.08999 * 109.38755 * 331.69175 * 7 6 5 9 9 C 1.52995 * 109.34272 * 212.07886 * 7 6 5 10 10 C 1.53949 * 110.09616 * 91.89875 * 7 6 5 11 11 N 1.44581 * 109.45257 * 119.93333 * 2 1 3 12 12 C 1.36946 * 118.63877 * 30.76559 * 11 2 1 13 13 H 1.07999 * 119.99912 * 28.93798 * 12 11 2 14 14 C 1.38812 * 119.99926 * 208.93756 * 12 11 2 15 15 N 1.31626 * 119.99668 * 13.25847 * 14 12 11 16 16 Si 1.86797 * 119.99909 * 193.26018 * 14 12 11 17 17 H 1.48497 * 109.47291 * 90.00159 * 16 14 12 18 18 H 1.48507 * 109.46920 * 210.00201 * 16 14 12 19 19 H 1.48497 * 109.47020 * 329.99733 * 16 14 12 20 20 H 1.08999 * 109.47374 * 300.06492 * 1 2 3 21 21 H 1.09001 * 109.47267 * 60.06124 * 1 2 3 22 22 H 1.08996 * 109.47333 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.32807 * 288.95033 * 4 2 1 24 24 H 1.08994 * 109.32946 * 48.60733 * 4 2 1 25 25 H 1.09000 * 108.51376 * 184.05634 * 5 4 2 26 26 H 1.09002 * 108.51338 * 301.54632 * 5 4 2 27 27 H 1.08998 * 109.48364 * 34.95922 * 6 5 4 28 28 H 1.09001 * 109.48594 * 155.02366 * 6 5 4 29 29 H 1.09004 * 109.47472 * 299.37470 * 9 7 6 30 30 H 1.08995 * 109.47529 * 59.37518 * 9 7 6 31 31 H 1.09002 * 109.46889 * 179.37709 * 9 7 6 32 32 H 1.08997 * 108.94842 * 198.71772 * 10 7 6 33 33 H 1.09003 * 108.94789 * 80.09790 * 10 7 6 34 34 H 0.96996 * 119.99260 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0455 -0.7287 -1.2654 5 6 3.4911 -0.5101 -1.4275 6 6 4.3430 -1.0732 -0.2940 7 6 4.4114 -0.0669 0.8274 8 1 4.3045 0.9379 0.4188 9 6 5.7645 -0.1841 1.5316 10 6 3.2834 -0.3281 1.8420 11 7 2.0114 -0.6803 1.1814 12 6 1.2561 -1.6935 1.7090 13 1 0.6195 -2.2835 1.0664 14 6 1.3089 -1.9623 3.0699 15 7 1.8683 -1.0981 3.8901 16 14 0.5860 -3.5502 3.7370 17 1 1.6299 -4.6063 3.7405 18 1 0.1007 -3.3293 5.1230 19 1 -0.5475 -3.9774 2.8779 20 1 -0.3634 0.5148 0.8894 21 1 -0.3634 0.5129 -0.8905 22 1 -0.3634 -1.0276 0.0005 23 1 1.8507 -1.7971 -1.1711 24 1 1.5244 -0.3429 -2.1415 25 1 3.8085 -0.9730 -2.3619 26 1 3.6732 0.5624 -1.4974 27 1 3.8954 -1.9969 0.0729 28 1 5.3487 -1.2770 -0.6616 29 1 5.8727 -1.1863 1.9465 30 1 6.5645 0.0006 0.8146 31 1 5.8205 0.5499 2.3355 32 1 3.1336 0.5686 2.4433 33 1 3.5800 -1.1466 2.4981 34 1 1.9048 -1.2858 4.8410 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307674405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:20 Heat of formation + Delta-G solvation = 0.501684 kcal Electronic energy + Delta-G solvation = -13691.814706 eV Core-core repulsion = 11624.487065 eV Total energy + Delta-G solvation = -2067.327641 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.21269 -34.17158 -33.20748 -30.83889 -28.50241 -25.73977 -25.36140 -23.06306 -21.45953 -19.59480 -18.58009 -16.02267 -15.33954 -14.30343 -14.04690 -13.88447 -13.39495 -12.93303 -12.42912 -12.07184 -11.79829 -11.45825 -11.29541 -11.01139 -10.81049 -10.74299 -10.57496 -10.23756 -10.08113 -9.81941 -9.77586 -9.55162 -9.27178 -9.25086 -8.31233 -6.50263 -5.68370 -3.13748 3.41264 3.48411 3.49024 4.56175 5.34956 5.44847 5.50622 5.62654 5.72419 5.92414 5.96134 6.16438 6.29829 6.36221 6.44322 6.49373 6.52660 6.61335 6.67060 6.79915 6.84205 6.85918 6.98410 7.00898 7.14258 7.30229 7.32455 7.58240 7.83351 7.92490 8.58833 9.35120 10.02655 10.48981 11.38823 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031785 B = 0.015397 C = 0.012185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.693481 B = 1818.043884 C = 2297.442030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.181 3.819 3 H 0.035 0.965 4 C -0.139 4.139 5 C -0.102 4.102 6 C -0.101 4.101 7 C -0.118 4.118 8 H 0.050 0.950 9 C -0.137 4.137 10 C 0.188 3.812 11 N -0.585 5.585 12 C -0.248 4.248 13 H 0.064 0.936 14 C 0.003 3.997 15 N -0.906 5.906 16 Si 0.897 3.103 17 H -0.289 1.289 18 H -0.292 1.292 19 H -0.280 1.280 20 H 0.052 0.948 21 H 0.031 0.969 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 1.471 -6.935 7.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.072 3.928 3 H 0.053 0.947 4 C -0.180 4.180 5 C -0.139 4.139 6 C -0.138 4.138 7 C -0.138 4.138 8 H 0.068 0.932 9 C -0.195 4.195 10 C 0.063 3.937 11 N -0.307 5.307 12 C -0.379 4.379 13 H 0.082 0.918 14 C -0.195 4.195 15 N -0.550 5.550 16 Si 0.728 3.272 17 H -0.216 1.216 18 H -0.219 1.219 19 H -0.205 1.205 20 H 0.071 0.929 21 H 0.050 0.950 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.380 1.490 -6.740 7.685 hybrid contribution -0.321 -0.839 0.437 0.999 sum 3.058 0.652 -6.302 7.035 Atomic orbital electron populations 1.21935 0.96865 1.01661 0.99227 1.20205 0.92353 0.93359 0.86883 0.94720 1.21481 0.95392 1.01912 0.99172 1.20315 0.96419 0.99778 0.97413 1.21009 0.97480 1.00182 0.95164 1.21662 0.96552 0.98009 0.97616 0.93173 1.21772 0.96479 1.01490 0.99713 1.21013 0.82190 0.99828 0.90708 1.43705 1.19265 1.38989 1.28699 1.19123 1.21349 1.07288 0.90095 0.91819 1.25065 1.00210 0.97995 0.96198 1.70054 1.48635 1.33846 1.02504 0.86368 0.78861 0.83864 0.78153 1.21608 1.21880 1.20538 0.92882 0.94988 0.92394 0.92322 0.93838 0.94453 0.93697 0.90967 0.94090 0.92996 0.94030 0.93249 0.96089 0.90908 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.52 37.15 0.32 -2.49 16 2 C 0.18 3.85 2.63 -67.98 -0.18 3.67 16 3 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 4 C -0.14 -2.60 5.06 -28.58 -0.14 -2.74 16 5 C -0.10 -1.77 5.15 -29.78 -0.15 -1.92 16 6 C -0.10 -1.87 5.02 -28.04 -0.14 -2.01 16 7 C -0.12 -2.30 2.53 -91.22 -0.23 -2.54 16 8 H 0.05 0.96 7.32 -51.93 -0.38 0.58 16 9 C -0.14 -2.33 8.88 37.15 0.33 -2.00 16 10 C 0.19 4.53 4.06 -2.95 -0.01 4.52 16 11 N -0.59 -14.49 2.23 -164.47 -0.37 -14.86 16 12 C -0.25 -6.70 8.24 -15.05 -0.12 -6.83 16 13 H 0.06 1.71 6.68 -52.49 -0.35 1.36 16 14 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 15 N -0.91 -26.32 11.03 55.49 0.61 -25.70 16 16 Si 0.90 21.89 29.57 -169.99 -5.03 16.87 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 1.21 6.59 -51.93 -0.34 0.87 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.75 7.36 -51.93 -0.38 0.37 16 27 H 0.07 1.53 7.48 -51.93 -0.39 1.14 16 28 H 0.04 0.67 7.73 -51.93 -0.40 0.27 16 29 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 30 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.56 8.01 -51.93 -0.42 0.14 16 33 H 0.07 1.95 6.26 -51.93 -0.33 1.63 16 34 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 258.00 15.07 3.89 3.89 Total: -1.00 -28.10 258.00 -7.23 -35.33 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.92 Total: -3.20 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -0.42 Total: -12.33 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.25 Total: -40.56 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.10 -7.23 -35.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307674405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.834 kcal (2) G-P(sol) polarization free energy of solvation -28.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds