Wall clock time and date at job start Sun Mar 29 2020 21:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47173 * 2 1 4 4 H 1.08994 * 109.47062 * 180.55719 * 3 2 1 5 5 N 1.46898 * 109.47256 * 300.55672 * 3 2 1 6 6 C 1.46895 * 111.00079 * 281.26905 * 5 3 2 7 7 C 1.53005 * 109.46872 * 175.05584 * 6 5 3 8 8 C 1.50703 * 109.46782 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00081 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99843 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99803 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00113 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46568 * 90.00232 * 12 10 8 14 14 H 1.48497 * 109.47309 * 210.00083 * 12 10 8 15 15 H 1.48498 * 109.46928 * 330.00824 * 12 10 8 16 16 C 1.52999 * 109.46859 * 60.55843 * 3 2 1 17 17 C 1.53003 * 117.49939 * 248.74625 * 16 3 2 18 18 C 1.52993 * 117.49893 * 180.08831 * 16 3 2 19 19 H 1.08998 * 109.46974 * 294.84809 * 1 2 3 20 20 H 1.09003 * 109.46667 * 174.85509 * 1 2 3 21 21 H 1.08997 * 109.47286 * 54.85108 * 1 2 3 22 22 H 1.08998 * 109.47189 * 120.00617 * 2 1 3 23 23 H 1.09008 * 109.47016 * 240.00643 * 2 1 3 24 24 H 1.00900 * 110.99627 * 157.30898 * 5 3 2 25 25 H 1.09005 * 109.47061 * 295.04854 * 6 5 3 26 26 H 1.08997 * 109.47274 * 55.05369 * 6 5 3 27 27 H 1.08998 * 109.46716 * 299.99093 * 7 6 5 28 28 H 1.08997 * 109.47347 * 59.99830 * 7 6 5 29 29 H 0.97005 * 120.00015 * 180.02562 * 11 10 8 30 30 H 1.09002 * 115.54902 * 34.41607 * 16 3 2 31 31 H 1.08998 * 117.49667 * 359.97438 * 17 16 3 32 32 H 1.09000 * 117.49984 * 145.01926 * 17 16 3 33 33 H 1.09003 * 117.49973 * 214.98425 * 18 16 3 34 34 H 1.09007 * 117.49771 * 359.97438 * 18 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0100 5 7 1.5394 2.1389 -1.1926 6 6 2.3249 1.7793 -2.3807 7 6 1.7004 2.4248 -3.6194 8 6 2.5067 2.0565 -4.8382 9 1 3.3775 1.4255 -4.7391 10 6 2.1324 2.5250 -6.0798 11 7 1.0722 3.2938 -6.2003 12 14 3.1321 2.0690 -7.5905 13 1 2.5973 0.8143 -8.1776 14 1 3.0423 3.1618 -8.5919 15 1 4.5515 1.8683 -7.2027 16 6 1.5415 2.1596 1.2562 17 6 0.5034 3.2684 1.0718 18 6 1.9457 3.6235 1.4413 19 1 -0.3633 0.4318 0.9325 20 1 -0.3633 -1.0236 -0.0922 21 1 -0.3634 0.5916 -0.8402 22 1 1.8933 -0.5139 0.8899 23 1 1.8933 -0.5138 -0.8901 24 1 1.5332 3.1380 -1.0519 25 1 3.3479 2.1364 -2.2617 26 1 2.3296 0.6958 -2.4989 27 1 0.6775 2.0678 -3.7385 28 1 1.6957 3.5084 -3.5012 29 1 0.8087 3.6232 -7.0738 30 1 1.4644 1.5418 2.1509 31 1 0.1760 3.4872 0.0554 32 1 -0.2564 3.3802 1.8453 33 1 2.1343 3.9690 2.4578 34 1 2.5672 4.0757 0.6683 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307983114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:51 Heat of formation + Delta-G solvation = -10.433481 kcal Electronic energy + Delta-G solvation = -12680.035515 eV Core-core repulsion = 10612.233689 eV Total energy + Delta-G solvation = -2067.801825 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.89527 -36.39119 -34.98191 -33.51752 -30.69755 -27.40504 -25.69770 -23.42728 -23.07751 -22.19924 -20.05998 -18.44133 -17.49343 -16.50930 -16.44083 -15.80081 -15.13800 -14.63676 -14.41013 -14.05820 -13.79348 -13.17768 -12.94632 -12.83151 -12.53186 -12.36435 -12.17543 -11.99177 -11.85295 -11.67717 -11.38002 -11.16189 -10.95367 -10.85410 -10.56363 -9.20616 -8.20992 -6.32720 1.39287 1.41141 1.52069 2.39754 2.93443 3.12190 3.42286 3.79006 3.98369 4.12738 4.22983 4.44383 4.50691 4.51852 4.63354 4.72683 4.84445 4.93453 5.03446 5.08624 5.14141 5.22210 5.28379 5.39617 5.42954 5.45070 5.64749 5.67829 5.80725 6.16041 6.32478 6.56092 6.84709 7.36572 8.91121 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.050226 B = 0.007234 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.349375 B = 3869.835076 C = 4058.062314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C 0.110 3.890 4 H 0.033 0.967 5 N -0.684 5.684 6 C 0.084 3.916 7 C 0.036 3.964 8 C -0.547 4.547 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.931 5.931 12 Si 0.967 3.033 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.264 1.264 16 C -0.146 4.146 17 C -0.174 4.174 18 C -0.186 4.186 19 H 0.061 0.939 20 H 0.048 0.952 21 H 0.043 0.957 22 H 0.080 0.920 23 H 0.043 0.957 24 H 0.336 0.664 25 H 0.012 0.988 26 H 0.057 0.943 27 H -0.006 1.006 28 H -0.012 1.012 29 H 0.264 0.736 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 -3.105 14.747 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.000 4.000 4 H 0.051 0.949 5 N -0.317 5.317 6 C -0.045 4.045 7 C -0.001 4.001 8 C -0.585 4.585 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.571 5.571 12 Si 0.791 3.209 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.188 1.188 16 C -0.165 4.165 17 C -0.211 4.211 18 C -0.223 4.223 19 H 0.080 0.920 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.099 0.901 23 H 0.062 0.938 24 H 0.156 0.844 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.012 0.988 28 H 0.006 0.994 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.684 -3.475 14.509 14.935 hybrid contribution 1.081 0.529 -0.986 1.556 sum 1.765 -2.946 13.523 13.952 Atomic orbital electron populations 1.21543 0.95167 1.00510 1.01934 1.21484 0.97208 0.94554 1.01268 1.21089 0.95763 0.94713 0.88401 0.94886 1.60686 1.55917 1.12354 1.02769 1.21784 0.93276 0.99404 0.90005 1.18865 0.95153 0.94107 0.91985 1.21630 1.12354 1.31172 0.93361 0.92310 1.25981 0.96303 0.94815 1.02608 1.70112 1.26744 1.35306 1.24929 0.85420 0.79132 0.78020 0.78299 1.19691 1.20576 1.18781 1.22395 1.04509 0.90972 0.98588 1.22994 0.92529 1.02688 1.02917 1.23063 0.98297 0.97872 1.03067 0.92042 0.93306 0.93793 0.90114 0.93833 0.84446 0.96946 0.92426 0.98800 0.99366 0.92728 0.85726 0.89360 0.87521 0.86963 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.49 71.98 0.68 -2.93 16 2 C -0.11 -2.89 5.69 30.60 0.17 -2.71 16 3 C 0.11 3.16 2.67 44.92 0.12 3.28 16 4 H 0.03 0.99 7.95 -2.39 -0.02 0.97 16 5 N -0.68 -24.67 4.66 -491.58 -2.29 -26.96 16 6 C 0.08 3.67 5.43 86.31 0.47 4.14 16 7 C 0.04 2.00 5.27 29.85 0.16 2.15 16 8 C -0.55 -32.01 9.11 25.60 0.23 -31.77 16 9 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 10 C 0.00 0.06 5.46 84.66 0.46 0.52 16 11 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 12 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 16 C -0.15 -3.37 4.57 -10.79 -0.05 -3.42 16 17 C -0.17 -4.07 9.66 30.62 0.30 -3.78 16 18 C -0.19 -4.06 9.85 30.61 0.30 -3.76 16 19 H 0.06 1.44 7.42 -2.39 -0.02 1.43 16 20 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.04 1.45 7.43 -2.39 -0.02 1.44 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.04 1.32 7.02 -2.38 -0.02 1.30 16 24 H 0.34 11.97 5.98 -89.69 -0.54 11.44 16 25 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.06 2.52 6.93 -2.39 -0.02 2.50 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 30 H 0.12 2.37 8.11 -2.39 -0.02 2.35 16 31 H 0.09 2.51 6.29 -2.39 -0.02 2.49 16 32 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.92 7.79 -2.38 -0.02 1.90 16 Total: -1.00 -63.63 273.99 3.38 -60.25 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.51 Total: 15.50 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 2.85 Total: -38.28 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -2.01 Total: -84.43 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.63 3.38 -60.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307983114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.820 kcal (2) G-P(sol) polarization free energy of solvation -63.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds