Wall clock time and date at job start Sun Mar 29 2020 21:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 115.55907 * 2 1 4 4 C 1.53076 * 117.51094 * 214.30476 * 2 1 3 5 5 C 1.52995 * 117.50126 * 145.69255 * 2 1 3 6 6 H 1.08993 * 117.49991 * 214.99761 * 5 2 1 7 7 C 1.53001 * 117.49798 * 359.97438 * 5 2 1 8 8 C 1.50699 * 109.47270 * 184.90948 * 7 5 2 9 9 O 1.21300 * 120.00049 * 0.02562 * 8 7 5 10 10 N 1.34781 * 120.00317 * 179.97438 * 8 7 5 11 11 C 1.46501 * 119.99639 * 0.02562 * 10 8 7 12 12 C 1.37094 * 120.00275 * 180.02562 * 10 8 7 13 13 H 1.08008 * 119.99976 * 336.04550 * 12 10 8 14 14 C 1.38944 * 120.00177 * 156.04152 * 12 10 8 15 15 N 1.31416 * 119.99913 * 348.37257 * 14 12 10 16 16 Si 1.86800 * 120.00258 * 168.37514 * 14 12 10 17 17 H 1.48494 * 109.47281 * 179.97438 * 16 14 12 18 18 H 1.48504 * 109.47030 * 299.99978 * 16 14 12 19 19 H 1.48500 * 109.47304 * 59.99559 * 16 14 12 20 20 H 1.09011 * 109.47025 * 274.30652 * 1 2 3 21 21 H 1.09000 * 109.47526 * 34.30548 * 1 2 3 22 22 H 1.08992 * 109.47154 * 154.31034 * 1 2 3 23 23 H 1.08998 * 117.49291 * 145.03428 * 4 2 1 24 24 H 1.08994 * 117.51453 * 359.97438 * 4 2 1 25 25 H 1.09001 * 109.47220 * 64.91314 * 7 5 2 26 26 H 1.08998 * 109.47507 * 304.91226 * 7 5 2 27 27 H 1.08999 * 109.46942 * 272.74730 * 11 10 8 28 28 H 1.08999 * 109.47151 * 32.74480 * 11 10 8 29 29 H 1.09002 * 109.46766 * 152.74676 * 11 10 8 30 30 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2371 -1.1215 -0.7652 5 6 2.2365 -1.1210 0.7649 6 1 3.1713 -0.8751 1.2684 7 6 1.3589 -2.1559 1.4718 8 6 2.2303 -3.0980 2.2617 9 8 3.4349 -2.9554 2.2599 10 7 1.6713 -4.0984 2.9711 11 6 0.2164 -4.2703 2.9737 12 6 2.4640 -4.9552 3.6901 13 1 3.4977 -5.0973 3.4108 14 6 1.9379 -5.6406 4.7782 15 7 0.7621 -5.3052 5.2599 16 14 2.9018 -7.0386 5.5564 17 1 2.1282 -7.6012 6.6923 18 1 3.1390 -8.0996 4.5447 19 1 4.2049 -6.5263 6.0512 20 1 -0.3634 0.0772 1.0249 21 1 -0.3634 0.8489 -0.5792 22 1 -0.3633 -0.9260 -0.4455 23 1 3.1723 -0.8755 -1.2681 24 1 1.6123 -1.8595 -1.2682 25 1 0.7932 -2.7199 0.7302 26 1 0.6690 -1.6479 2.1456 27 1 -0.2207 -3.6554 3.7605 28 1 -0.1872 -3.9656 2.0081 29 1 -0.0254 -5.3177 3.1545 30 1 0.3949 -5.7835 6.0197 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334150535.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:14 Heat of formation + Delta-G solvation = -15.055403 kcal Electronic energy + Delta-G solvation = -12589.127451 eV Core-core repulsion = 10385.292109 eV Total energy + Delta-G solvation = -2203.835341 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.76495 -37.15065 -34.54592 -31.60634 -29.29436 -27.88449 -26.06521 -24.18976 -21.33142 -19.84477 -18.20570 -16.81772 -16.18009 -15.21593 -14.62522 -14.14322 -13.88215 -13.34510 -13.00549 -12.49771 -12.18764 -11.86438 -11.47606 -11.28855 -11.21985 -11.12397 -10.89449 -10.65731 -10.37239 -10.17741 -9.57671 -9.39961 -8.95421 -8.29478 -7.60184 -6.26560 -3.82990 3.22211 3.26951 3.31280 3.96843 4.07662 4.21365 4.84303 5.01209 5.15605 5.25996 5.32754 5.49323 5.77102 5.91591 5.94970 6.06054 6.07976 6.17365 6.20015 6.37941 6.45828 6.51510 6.79992 6.91454 7.25034 7.61284 8.20961 8.55863 9.25605 9.49898 10.07155 10.78294 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.070129 B = 0.008482 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.167028 B = 3300.505889 C = 3578.351271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.164 4.164 3 H 0.099 0.901 4 C -0.178 4.178 5 C -0.121 4.121 6 H 0.115 0.885 7 C -0.098 4.098 8 C 0.450 3.550 9 O -0.590 6.590 10 N -0.451 5.451 11 C 0.114 3.886 12 C -0.306 4.306 13 H 0.096 0.904 14 C 0.029 3.971 15 N -0.886 5.886 16 Si 0.926 3.074 17 H -0.284 1.284 18 H -0.274 1.274 19 H -0.273 1.273 20 H 0.060 0.940 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.806 5.407 -7.163 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.183 4.183 3 H 0.117 0.883 4 C -0.215 4.215 5 C -0.139 4.139 6 H 0.133 0.867 7 C -0.138 4.138 8 C 0.238 3.762 9 O -0.475 6.475 10 N -0.170 5.170 11 C -0.030 4.030 12 C -0.434 4.434 13 H 0.114 0.886 14 C -0.174 4.174 15 N -0.526 5.526 16 Si 0.753 3.247 17 H -0.210 1.210 18 H -0.200 1.200 19 H -0.198 1.198 20 H 0.079 0.921 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.364 5.378 -6.989 9.438 hybrid contribution 0.220 -0.725 0.514 0.916 sum -3.144 4.653 -6.474 8.570 Atomic orbital electron populations 1.21323 0.93229 1.01449 1.01750 1.22401 0.95160 0.94404 1.06303 0.88334 1.23112 1.01985 1.01231 0.95138 1.22168 1.01050 0.97662 0.93057 0.86699 1.21063 0.97804 0.95935 0.99035 1.20071 0.88765 0.82527 0.84833 1.90486 1.15293 1.73762 1.67942 1.43581 1.06081 1.25356 1.42006 1.21462 0.81379 1.03284 0.96909 1.19608 0.96235 1.18705 1.08844 0.88595 1.25335 0.96735 0.99420 0.95881 1.69987 1.17935 1.40267 1.24370 0.85998 0.79436 0.80846 0.78398 1.20977 1.19973 1.19835 0.92144 0.92760 0.92579 0.89319 0.89193 0.90658 0.90038 0.92999 0.95714 0.90885 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 9.20 37.16 0.34 -1.09 16 2 C -0.16 -2.25 6.41 -90.58 -0.58 -2.83 16 3 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.18 -2.60 9.83 -26.69 -0.26 -2.86 16 5 C -0.12 -2.11 5.41 -90.62 -0.49 -2.60 16 6 H 0.12 2.26 7.31 -51.93 -0.38 1.88 16 7 C -0.10 -1.87 3.65 -27.88 -0.10 -1.97 16 8 C 0.45 11.33 7.63 -10.98 -0.08 11.25 16 9 O -0.59 -16.86 15.27 5.54 0.08 -16.77 16 10 N -0.45 -11.95 3.01 -122.19 -0.37 -12.31 16 11 C 0.11 2.59 8.46 59.85 0.51 3.10 16 12 C -0.31 -8.80 9.25 -14.94 -0.14 -8.93 16 13 H 0.10 2.88 7.44 -52.48 -0.39 2.49 16 14 C 0.03 0.78 5.08 -17.47 -0.09 0.69 16 15 N -0.89 -24.13 10.74 55.50 0.60 -23.54 16 16 Si 0.93 21.20 29.57 -169.99 -5.03 16.17 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 20 H 0.06 0.72 7.84 -51.92 -0.41 0.31 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.65 7.90 -51.93 -0.41 0.24 16 23 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.09 1.25 7.94 -51.93 -0.41 0.84 16 25 H 0.08 1.30 7.14 -51.93 -0.37 0.93 16 26 H 0.08 1.46 7.74 -51.93 -0.40 1.05 16 27 H 0.05 1.21 7.77 -51.93 -0.40 0.81 16 28 H 0.02 0.46 6.55 -51.93 -0.34 0.12 16 29 H 0.07 1.76 6.83 -51.93 -0.35 1.40 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 252.01 15.07 3.80 3.80 Total: -1.00 -31.04 252.01 -6.09 -37.13 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.27 Total: 0.76 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.90 Total: -5.23 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.23 Total: -35.85 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.08 Total: -16.77 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.04 -6.09 -37.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334150535.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.074 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds