Wall clock time and date at job start Sun Mar 29 2020 21:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 115.54831 * 2 1 4 4 C 1.53005 * 117.49573 * 145.70256 * 2 1 3 5 5 C 1.52995 * 117.49984 * 214.32228 * 2 1 3 6 6 H 1.09007 * 117.49717 * 0.03053 * 5 2 1 7 7 C 1.52994 * 117.49776 * 145.01974 * 5 2 1 8 8 C 1.50706 * 109.47333 * 185.00116 * 7 5 2 9 9 O 1.21288 * 119.99639 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00092 * 180.02562 * 8 7 5 11 11 C 1.46505 * 120.00273 * 0.02562 * 10 8 7 12 12 C 1.37098 * 119.99866 * 180.02562 * 10 8 7 13 13 H 1.07999 * 120.00005 * 331.16382 * 12 10 8 14 14 C 1.38958 * 119.99909 * 151.16692 * 12 10 8 15 15 N 1.31409 * 119.99875 * 331.78115 * 14 12 10 16 16 Si 1.86801 * 119.99990 * 151.78317 * 14 12 10 17 17 H 1.48501 * 109.46864 * 269.99820 * 16 14 12 18 18 H 1.48497 * 109.47043 * 29.99407 * 16 14 12 19 19 H 1.48493 * 109.47151 * 149.99784 * 16 14 12 20 20 H 1.08996 * 109.47456 * 205.67063 * 1 2 3 21 21 H 1.08999 * 109.47258 * 325.67616 * 1 2 3 22 22 H 1.08999 * 109.47045 * 85.66993 * 1 2 3 23 23 H 1.08999 * 117.49717 * 0.02562 * 4 2 1 24 24 H 1.08997 * 117.49925 * 214.98209 * 4 2 1 25 25 H 1.09001 * 109.47083 * 65.00854 * 7 5 2 26 26 H 1.08999 * 109.47827 * 305.00331 * 7 5 2 27 27 H 1.08999 * 109.46572 * 274.71392 * 11 10 8 28 28 H 1.09001 * 109.46859 * 34.71009 * 11 10 8 29 29 H 1.08998 * 109.47539 * 154.71581 * 11 10 8 30 30 H 0.97000 * 120.00055 * 353.85275 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 1.6112 -1.8579 -1.2691 7 6 3.5490 -0.7755 -1.4715 8 6 4.0217 -1.9673 -2.2637 9 8 3.3725 -2.9917 -2.2637 10 7 5.1659 -1.8946 -2.9721 11 6 5.9505 -0.6573 -2.9717 12 6 5.5957 -2.9786 -3.6932 13 1 5.3413 -3.9772 -3.3702 14 6 6.3587 -2.7922 -4.8395 15 7 6.2253 -1.6923 -5.5460 16 14 7.5740 -4.1054 -5.3763 17 1 8.8958 -3.8407 -4.7535 18 1 7.0829 -5.4395 -4.9471 19 1 7.7094 -4.0799 -6.8548 20 1 -0.3634 -0.9262 0.4452 21 1 -0.3634 0.8487 0.5795 22 1 -0.3633 0.0776 -1.0247 23 1 1.6111 -1.8590 1.2675 24 1 3.1715 -0.8756 1.2682 25 1 4.3022 -0.5107 -0.7295 26 1 3.3891 0.0674 -2.1439 27 1 5.5633 0.0185 -3.7342 28 1 5.8781 -0.1815 -1.9937 29 1 6.9937 -0.8885 -3.1870 30 1 5.5333 -1.0513 -5.3195 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334150536.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:15 Heat of formation + Delta-G solvation = -20.041109 kcal Electronic energy + Delta-G solvation = -12508.729076 eV Core-core repulsion = 10304.677538 eV Total energy + Delta-G solvation = -2204.051538 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.84673 -37.23892 -34.80498 -31.62697 -29.88177 -27.37004 -26.26068 -23.90139 -21.23101 -20.13243 -18.87795 -17.26229 -15.86159 -15.23699 -14.59642 -14.29441 -13.92424 -13.71153 -13.02073 -12.54821 -12.29246 -12.08365 -11.71830 -11.51719 -11.26525 -11.14119 -10.81325 -10.71780 -10.19140 -9.96414 -9.72272 -9.45776 -8.89635 -8.31022 -7.77666 -6.58783 -3.86716 3.32743 3.38408 3.57841 3.87384 4.01281 4.27334 4.67518 4.99079 5.08856 5.12533 5.23940 5.41642 5.66751 5.81716 5.84885 5.90027 5.98457 6.05200 6.08654 6.17952 6.24960 6.40109 6.41987 6.62431 6.74045 7.96377 8.15092 8.69813 8.98588 9.46454 9.94309 10.66916 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.076488 B = 0.007851 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.980607 B = 3565.509640 C = 3686.500177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.164 4.164 3 H 0.099 0.901 4 C -0.176 4.176 5 C -0.122 4.122 6 H 0.116 0.884 7 C -0.103 4.103 8 C 0.452 3.548 9 O -0.580 6.580 10 N -0.459 5.459 11 C 0.086 3.914 12 C -0.404 4.404 13 H 0.087 0.913 14 C 0.007 3.993 15 N -0.878 5.878 16 Si 1.076 2.924 17 H -0.285 1.285 18 H -0.283 1.283 19 H -0.284 1.284 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 5.373 8.211 10.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.182 4.182 3 H 0.118 0.882 4 C -0.213 4.213 5 C -0.140 4.140 6 H 0.134 0.866 7 C -0.143 4.143 8 C 0.240 3.760 9 O -0.463 6.463 10 N -0.179 5.179 11 C -0.059 4.059 12 C -0.531 4.531 13 H 0.105 0.895 14 C -0.200 4.200 15 N -0.512 5.512 16 Si 0.903 3.097 17 H -0.211 1.211 18 H -0.209 1.209 19 H -0.210 1.210 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.943 4.524 7.073 8.897 hybrid contribution -1.064 0.579 1.109 1.642 sum -4.006 5.103 8.182 10.442 Atomic orbital electron populations 1.21327 0.93180 1.01470 1.01690 1.22411 0.95046 0.94561 1.06190 0.88247 1.23141 1.02135 1.01006 0.95035 1.22181 0.98161 1.00542 0.93136 0.86622 1.21148 0.95802 0.98253 0.99110 1.20124 0.81397 0.89580 0.84868 1.90493 1.55990 1.32557 1.67303 1.43636 1.18527 1.12635 1.43139 1.21647 0.97552 0.87800 0.98892 1.20367 1.36286 0.87623 1.08824 0.89477 1.26373 1.00188 1.01790 0.91616 1.70735 1.33377 1.11642 1.35463 0.83395 0.75492 0.74626 0.76224 1.21112 1.20895 1.20974 0.92677 0.92606 0.92296 0.89153 0.89268 0.90606 0.90140 0.93828 0.93735 0.91174 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 10.19 37.16 0.38 -1.02 16 2 C -0.16 -2.22 6.13 -90.62 -0.56 -2.77 16 3 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.18 -2.55 9.82 -26.73 -0.26 -2.81 16 5 C -0.12 -2.11 5.13 -90.63 -0.47 -2.57 16 6 H 0.12 2.29 7.31 -51.92 -0.38 1.91 16 7 C -0.10 -1.93 4.60 -27.88 -0.13 -2.06 16 8 C 0.45 11.34 7.63 -10.99 -0.08 11.26 16 9 O -0.58 -16.72 15.32 5.55 0.09 -16.64 16 10 N -0.46 -12.00 2.82 -122.19 -0.35 -12.34 16 11 C 0.09 1.86 8.47 59.85 0.51 2.36 16 12 C -0.40 -11.70 8.96 -14.93 -0.13 -11.83 16 13 H 0.09 2.70 7.65 -52.49 -0.40 2.30 16 14 C 0.01 0.21 4.65 -17.47 -0.08 0.12 16 15 N -0.88 -24.93 12.84 55.50 0.71 -24.21 16 16 Si 1.08 24.32 30.00 -169.99 -5.10 19.22 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 H 0.05 0.63 7.90 -51.93 -0.41 0.22 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.09 1.23 8.05 -51.93 -0.42 0.82 16 24 H 0.09 1.21 8.03 -51.93 -0.42 0.79 16 25 H 0.08 1.27 7.14 -51.93 -0.37 0.90 16 26 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 27 H 0.04 0.93 6.99 -51.93 -0.36 0.57 16 28 H 0.04 0.79 6.63 -51.93 -0.34 0.45 16 29 H 0.07 1.59 7.44 -51.93 -0.39 1.20 16 30 H 0.27 7.80 6.58 -40.82 -0.27 7.53 16 LS Contribution 254.14 15.07 3.83 3.83 Total: -1.00 -32.24 254.14 -5.89 -38.12 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.24 Total: 1.33 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -0.82 Total: -9.32 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.37 Total: -36.56 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.09 Total: -16.64 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.10 Total: 19.22 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.24 -5.89 -38.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334150536.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.082 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds