Wall clock time and date at job start Sun Mar 29 2020 21:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 115.54831 * 2 1 4 4 C 1.53005 * 117.49573 * 145.70256 * 2 1 3 5 5 C 1.52995 * 117.49984 * 214.32228 * 2 1 3 6 6 H 1.09007 * 117.49717 * 0.03053 * 5 2 1 7 7 C 1.52994 * 117.49776 * 145.01974 * 5 2 1 8 8 C 1.50706 * 109.47333 * 185.00116 * 7 5 2 9 9 O 1.21288 * 119.99639 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00092 * 180.02562 * 8 7 5 11 11 C 1.46505 * 120.00273 * 0.02562 * 10 8 7 12 12 C 1.37098 * 119.99866 * 180.02562 * 10 8 7 13 13 H 1.07999 * 120.00005 * 331.16382 * 12 10 8 14 14 C 1.38958 * 119.99909 * 151.16692 * 12 10 8 15 15 N 1.31409 * 119.99875 * 331.78115 * 14 12 10 16 16 Si 1.86801 * 119.99990 * 151.78317 * 14 12 10 17 17 H 1.48501 * 109.46864 * 269.99820 * 16 14 12 18 18 H 1.48497 * 109.47043 * 29.99407 * 16 14 12 19 19 H 1.48493 * 109.47151 * 149.99784 * 16 14 12 20 20 H 1.08996 * 109.47456 * 205.67063 * 1 2 3 21 21 H 1.08999 * 109.47258 * 325.67616 * 1 2 3 22 22 H 1.08999 * 109.47045 * 85.66993 * 1 2 3 23 23 H 1.08999 * 117.49717 * 0.02562 * 4 2 1 24 24 H 1.08997 * 117.49925 * 214.98209 * 4 2 1 25 25 H 1.09001 * 109.47083 * 65.00854 * 7 5 2 26 26 H 1.08999 * 109.47827 * 305.00331 * 7 5 2 27 27 H 1.08999 * 109.46572 * 274.71392 * 11 10 8 28 28 H 1.09001 * 109.46859 * 34.71009 * 11 10 8 29 29 H 1.08998 * 109.47539 * 154.71581 * 11 10 8 30 30 H 0.97000 * 120.00055 * 353.85275 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 1.6112 -1.8579 -1.2691 7 6 3.5490 -0.7755 -1.4715 8 6 4.0217 -1.9673 -2.2637 9 8 3.3725 -2.9917 -2.2637 10 7 5.1659 -1.8946 -2.9721 11 6 5.9505 -0.6573 -2.9717 12 6 5.5957 -2.9786 -3.6932 13 1 5.3413 -3.9772 -3.3702 14 6 6.3587 -2.7922 -4.8395 15 7 6.2253 -1.6923 -5.5460 16 14 7.5740 -4.1054 -5.3763 17 1 8.8958 -3.8407 -4.7535 18 1 7.0829 -5.4395 -4.9471 19 1 7.7094 -4.0799 -6.8548 20 1 -0.3634 -0.9262 0.4452 21 1 -0.3634 0.8487 0.5795 22 1 -0.3633 0.0776 -1.0247 23 1 1.6111 -1.8590 1.2675 24 1 3.1715 -0.8756 1.2682 25 1 4.3022 -0.5107 -0.7295 26 1 3.3891 0.0674 -2.1439 27 1 5.5633 0.0185 -3.7342 28 1 5.8781 -0.1815 -1.9937 29 1 6.9937 -0.8885 -3.1870 30 1 5.5333 -1.0513 -5.3195 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334150536.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:15 Heat of formation + Delta-G solvation = -40.301295 kcal Electronic energy + Delta-G solvation = -12509.607624 eV Core-core repulsion = 10304.677538 eV Total energy + Delta-G solvation = -2204.930085 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.66652 -38.61509 -36.85519 -33.69525 -31.29559 -28.70847 -28.04691 -25.88149 -22.60710 -21.37805 -20.61862 -19.31824 -17.70511 -16.98123 -16.40333 -15.87838 -15.57551 -15.21604 -14.23100 -14.13248 -13.89983 -13.60693 -13.40219 -13.03030 -12.98416 -12.62268 -12.27690 -12.14306 -11.98774 -11.94639 -10.96558 -10.89387 -10.68808 -10.29716 -9.87078 -8.79257 -6.09489 1.50417 1.53832 1.81908 1.98689 2.39050 2.76630 2.94406 3.04600 3.74053 3.85245 3.96426 4.15254 4.30542 4.43825 4.55044 4.58382 4.69915 4.81456 4.85827 4.89326 4.94579 4.98650 5.18218 5.31709 5.47876 5.78677 5.89008 6.61653 6.89814 7.38897 7.91365 8.45582 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.076488 B = 0.007851 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.980607 B = 3565.509640 C = 3686.500177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 H 0.121 0.879 4 C -0.171 4.171 5 C -0.160 4.160 6 H 0.079 0.921 7 C -0.086 4.086 8 C 0.439 3.561 9 O -0.630 6.630 10 N -0.477 5.477 11 C 0.090 3.910 12 C -0.436 4.436 13 H 0.052 0.948 14 C -0.023 4.023 15 N -0.887 5.887 16 Si 1.125 2.875 17 H -0.261 1.261 18 H -0.282 1.282 19 H -0.278 1.278 20 H 0.052 0.948 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 7.001 9.310 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 H 0.139 0.861 4 C -0.208 4.208 5 C -0.179 4.179 6 H 0.097 0.903 7 C -0.126 4.126 8 C 0.230 3.770 9 O -0.517 6.517 10 N -0.197 5.197 11 C -0.053 4.053 12 C -0.564 4.564 13 H 0.070 0.930 14 C -0.226 4.226 15 N -0.521 5.521 16 Si 0.945 3.055 17 H -0.185 1.185 18 H -0.207 1.207 19 H -0.203 1.203 20 H 0.071 0.929 21 H 0.100 0.900 22 H 0.074 0.926 23 H 0.112 0.888 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.461 6.197 8.184 10.556 hybrid contribution -1.293 0.074 0.786 1.515 sum -3.754 6.271 8.970 11.570 Atomic orbital electron populations 1.21398 0.91975 1.02585 1.02029 1.22560 0.95977 0.94360 1.02296 0.86060 1.23267 1.03102 1.01598 0.92812 1.22015 0.98025 1.03006 0.94851 0.90293 1.21074 0.97025 0.95324 0.99131 1.21318 0.80543 0.90772 0.84417 1.90453 1.57325 1.35068 1.68847 1.43937 1.19560 1.13293 1.42934 1.21728 0.95996 0.86073 1.01503 1.20312 1.38253 0.87526 1.10259 0.92990 1.27763 1.00825 1.03045 0.90972 1.70847 1.33386 1.12054 1.35797 0.82798 0.74323 0.72171 0.76249 1.18549 1.20720 1.20301 0.92875 0.89992 0.92616 0.88827 0.87849 0.87781 0.88425 0.93709 0.89243 0.92527 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 10.19 71.98 0.73 -1.81 16 2 C -0.13 -3.21 6.13 -10.79 -0.07 -3.28 16 3 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 4 C -0.17 -4.55 9.82 30.60 0.30 -4.25 16 5 C -0.16 -5.39 5.13 -10.80 -0.06 -5.45 16 6 H 0.08 3.24 7.31 -2.38 -0.02 3.22 16 7 C -0.09 -3.08 4.60 29.85 0.14 -2.94 16 8 C 0.44 22.35 7.63 87.66 0.67 23.02 16 9 O -0.63 -37.94 15.32 -3.05 -0.05 -37.99 16 10 N -0.48 -25.20 2.82 -658.88 -1.86 -27.06 16 11 C 0.09 3.81 8.47 127.77 1.08 4.89 16 12 C -0.44 -25.99 8.96 84.04 0.75 -25.23 16 13 H 0.05 3.39 7.65 -2.91 -0.02 3.37 16 14 C -0.02 -1.26 4.65 84.93 0.39 -0.87 16 15 N -0.89 -50.37 12.84 21.67 0.28 -50.09 16 16 Si 1.12 48.89 30.00 68.60 2.06 50.95 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 20 H 0.05 1.11 7.90 -2.39 -0.02 1.09 16 21 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.09 2.40 8.05 -2.39 -0.02 2.38 16 24 H 0.10 2.46 8.03 -2.39 -0.02 2.44 16 25 H 0.10 3.13 7.14 -2.39 -0.02 3.12 16 26 H 0.10 3.15 8.11 -2.39 -0.02 3.13 16 27 H 0.04 1.86 6.99 -2.39 -0.02 1.85 16 28 H 0.09 2.91 6.63 -2.39 -0.02 2.90 16 29 H 0.06 2.52 7.44 -2.39 -0.02 2.50 16 30 H 0.26 15.19 6.58 -92.71 -0.61 14.58 16 Total: -1.00 -72.31 254.14 5.65 -66.66 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.27 Total: 13.45 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 3.95 Total: -15.92 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -1.58 Total: -77.15 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.05 Total: -37.99 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.06 Total: 50.95 kcal Total: -72.31 5.65 -66.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334150536.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.362 kcal (2) G-P(sol) polarization free energy of solvation -72.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds