Wall clock time and date at job start Sun Mar 29 2020 21:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47230 * 2 1 4 4 H 1.09000 * 115.55040 * 29.33110 * 3 2 1 5 5 C 1.53001 * 117.52073 * 243.62642 * 3 2 1 6 6 C 1.52995 * 59.99889 * 252.51974 * 5 3 2 7 7 H 1.09000 * 117.51774 * 107.48112 * 6 5 3 8 8 C 1.52998 * 117.49925 * 252.50737 * 6 5 3 9 9 N 1.46902 * 109.47511 * 243.62735 * 8 6 5 10 10 C 1.46895 * 111.00037 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.47678 * 324.99963 * 10 9 8 12 12 C 1.52998 * 109.47264 * 85.00105 * 10 9 8 13 13 C 1.50706 * 109.47182 * 204.99721 * 10 9 8 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00436 * 179.72677 * 13 10 9 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.46683 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99743 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99986 * 17 15 13 21 21 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47120 * 300.00473 * 1 2 3 23 23 H 1.09007 * 109.46819 * 60.00207 * 1 2 3 24 24 H 1.09001 * 109.46895 * 240.00019 * 2 1 3 25 25 H 1.08995 * 109.46823 * 120.00256 * 2 1 3 26 26 H 1.08998 * 117.50194 * 145.02613 * 5 3 2 27 27 H 1.09006 * 117.49251 * 0.02562 * 5 3 2 28 28 H 1.09002 * 109.47596 * 123.62223 * 8 6 5 29 29 H 1.09008 * 109.47133 * 3.62668 * 8 6 5 30 30 H 1.00905 * 110.99700 * 303.95200 * 9 8 6 31 31 H 1.09002 * 109.47539 * 59.99708 * 12 10 9 32 32 H 1.09005 * 109.47120 * 180.02562 * 12 10 9 33 33 H 1.09002 * 109.47051 * 299.99298 * 12 10 9 34 34 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8440 1.9081 -1.2156 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7719 0.1962 8 6 4.0301 2.8800 0.9038 9 7 5.4951 2.8508 1.0080 10 6 5.9928 4.0122 1.7572 11 1 5.3680 4.8789 1.5413 12 6 5.9457 3.7104 3.2564 13 6 7.4138 4.3028 1.3477 14 1 7.8984 3.6865 0.6049 15 6 8.0930 5.3590 1.9168 16 7 7.5006 6.1133 2.8167 17 14 9.8540 5.7196 1.4088 18 1 10.2865 4.7323 0.3874 19 1 9.9346 7.0888 0.8397 20 1 10.7411 5.6240 2.5959 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.7213 2.9433 -1.5338 27 1 3.0093 1.1867 -2.0160 28 1 3.5944 2.8640 1.9028 29 1 3.7207 3.7885 0.3870 30 1 5.8108 1.9882 1.4258 31 1 6.5705 2.8438 3.4724 32 1 6.3146 4.5724 3.8123 33 1 4.9180 3.5003 3.5526 34 1 7.9783 6.8567 3.2169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387853165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:16 Heat of formation + Delta-G solvation = 3.324817 kcal Electronic energy + Delta-G solvation = -12347.300508 eV Core-core repulsion = 10280.095288 eV Total energy + Delta-G solvation = -2067.205221 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.12808 -35.57464 -32.71191 -31.69068 -28.61271 -25.18365 -24.51973 -23.61260 -20.51976 -20.33520 -19.84785 -16.28284 -15.03310 -14.86485 -14.49298 -14.23176 -13.96411 -13.14905 -12.84852 -12.38842 -12.06630 -11.68010 -11.56334 -11.33350 -11.04189 -10.95181 -10.83433 -10.71699 -10.51464 -10.11665 -9.98447 -9.62864 -9.35502 -8.93075 -8.33014 -7.14312 -5.94833 -3.97787 3.34200 3.41638 3.47499 3.99723 4.47169 4.69264 5.04683 5.10019 5.23917 5.36539 5.36850 5.41376 5.72654 5.82754 5.85259 5.91802 6.05738 6.08520 6.11514 6.22218 6.32366 6.43804 6.69158 6.73880 6.88334 7.14134 7.42659 7.77467 7.93678 8.32443 8.60575 8.68020 9.10127 9.67573 11.12450 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.076681 B = 0.006087 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.061317 B = 4598.710602 C = 4778.967409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.160 4.160 4 H 0.100 0.900 5 C -0.171 4.171 6 C -0.134 4.134 7 H 0.101 0.899 8 C 0.090 3.910 9 N -0.682 5.682 10 C 0.209 3.791 11 H 0.032 0.968 12 C -0.168 4.168 13 C -0.493 4.493 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.020 0.980 29 H 0.063 0.937 30 H 0.324 0.676 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.005 0.995 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 -9.005 -3.833 14.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.179 4.179 4 H 0.118 0.882 5 C -0.208 4.208 6 C -0.152 4.152 7 H 0.119 0.881 8 C -0.040 4.040 9 N -0.312 5.312 10 C 0.102 3.898 11 H 0.050 0.950 12 C -0.228 4.228 13 C -0.532 4.532 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.212 1.212 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.024 0.976 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.057 -8.538 -4.349 13.891 hybrid contribution 0.682 0.101 0.753 1.021 sum -9.375 -8.437 -3.596 13.115 Atomic orbital electron populations 1.21746 0.95831 1.01169 1.01817 1.21091 0.95589 0.94580 1.01693 1.22482 0.94435 0.97528 1.03437 0.88195 1.23110 1.04239 1.01937 0.91484 1.22442 0.93022 1.00432 0.99330 0.88056 1.21470 0.90709 0.95311 0.96510 1.60779 1.06342 1.06337 1.57742 1.19182 0.95651 0.87585 0.87413 0.94983 1.22424 0.96105 1.02081 1.02153 1.21220 0.97200 1.12824 1.21919 0.91893 1.24961 0.98297 0.96140 0.95249 1.69903 1.36938 1.18633 1.28416 0.86452 0.84670 0.78055 0.78294 1.19728 1.21160 1.21231 0.93040 0.92770 0.92744 0.92101 0.91894 0.89017 0.89380 0.96163 0.91815 0.85953 0.95340 0.89356 0.97640 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.87 37.16 0.37 -1.01 16 2 C -0.09 -0.99 6.22 -26.73 -0.17 -1.16 16 3 C -0.16 -2.05 5.46 -90.62 -0.49 -2.54 16 4 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 5 C -0.17 -2.33 9.82 -26.73 -0.26 -2.59 16 6 C -0.13 -2.05 5.67 -90.63 -0.51 -2.56 16 7 H 0.10 1.54 8.13 -51.93 -0.42 1.12 16 8 C 0.09 1.68 5.76 -3.82 -0.02 1.66 16 9 N -0.68 -15.04 6.23 -107.95 -0.67 -15.71 16 10 C 0.21 5.42 2.57 -68.87 -0.18 5.25 16 11 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 12 C -0.17 -4.15 8.94 37.16 0.33 -3.82 16 13 C -0.49 -13.98 8.84 -34.44 -0.30 -14.28 16 14 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 16 N -0.90 -26.18 11.34 55.43 0.63 -25.55 16 17 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.63 7.88 -51.93 -0.41 0.22 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 27 H 0.09 1.09 8.03 -51.93 -0.42 0.68 16 28 H 0.02 0.38 7.44 -51.93 -0.39 0.00 16 29 H 0.06 1.24 7.79 -51.92 -0.40 0.84 16 30 H 0.32 6.75 8.46 -39.29 -0.33 6.42 16 31 H 0.03 0.67 8.13 -51.93 -0.42 0.24 16 32 H 0.09 2.40 6.09 -51.93 -0.32 2.09 16 33 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 278.88 15.07 4.20 4.20 Total: -1.00 -28.72 278.88 -8.17 -36.89 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.97 Total: 3.01 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -1.34 Total: -19.63 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: -0.04 Total: -41.26 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.72 -8.17 -36.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387853165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.215 kcal (2) G-P(sol) polarization free energy of solvation -28.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds