Wall clock time and date at job start Sun Mar 29 2020 21:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47230 * 2 1 4 4 H 1.09000 * 115.55040 * 29.33110 * 3 2 1 5 5 C 1.53001 * 117.52073 * 243.62642 * 3 2 1 6 6 C 1.52995 * 59.99889 * 252.51974 * 5 3 2 7 7 H 1.09000 * 117.51774 * 107.48112 * 6 5 3 8 8 C 1.52998 * 117.49925 * 252.50737 * 6 5 3 9 9 N 1.46902 * 109.47511 * 243.62735 * 8 6 5 10 10 C 1.46895 * 111.00037 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.47678 * 324.99963 * 10 9 8 12 12 C 1.52998 * 109.47264 * 85.00105 * 10 9 8 13 13 C 1.50706 * 109.47182 * 204.99721 * 10 9 8 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00436 * 179.72677 * 13 10 9 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.46683 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99743 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99986 * 17 15 13 21 21 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47120 * 300.00473 * 1 2 3 23 23 H 1.09007 * 109.46819 * 60.00207 * 1 2 3 24 24 H 1.09001 * 109.46895 * 240.00019 * 2 1 3 25 25 H 1.08995 * 109.46823 * 120.00256 * 2 1 3 26 26 H 1.08998 * 117.50194 * 145.02613 * 5 3 2 27 27 H 1.09006 * 117.49251 * 0.02562 * 5 3 2 28 28 H 1.09002 * 109.47596 * 123.62223 * 8 6 5 29 29 H 1.09008 * 109.47133 * 3.62668 * 8 6 5 30 30 H 1.00905 * 110.99700 * 303.95200 * 9 8 6 31 31 H 1.09002 * 109.47539 * 59.99708 * 12 10 9 32 32 H 1.09005 * 109.47120 * 180.02562 * 12 10 9 33 33 H 1.09002 * 109.47051 * 299.99298 * 12 10 9 34 34 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8440 1.9081 -1.2156 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7719 0.1962 8 6 4.0301 2.8800 0.9038 9 7 5.4951 2.8508 1.0080 10 6 5.9928 4.0122 1.7572 11 1 5.3680 4.8789 1.5413 12 6 5.9457 3.7104 3.2564 13 6 7.4138 4.3028 1.3477 14 1 7.8984 3.6865 0.6049 15 6 8.0930 5.3590 1.9168 16 7 7.5006 6.1133 2.8167 17 14 9.8540 5.7196 1.4088 18 1 10.2865 4.7323 0.3874 19 1 9.9346 7.0888 0.8397 20 1 10.7411 5.6240 2.5959 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.7213 2.9433 -1.5338 27 1 3.0093 1.1867 -2.0160 28 1 3.5944 2.8640 1.9028 29 1 3.7207 3.7885 0.3870 30 1 5.8108 1.9882 1.4258 31 1 6.5705 2.8438 3.4724 32 1 6.3146 4.5724 3.8123 33 1 4.9180 3.5003 3.5526 34 1 7.9783 6.8567 3.2169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387853165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:15 Heat of formation + Delta-G solvation = -13.578617 kcal Electronic energy + Delta-G solvation = -12348.033496 eV Core-core repulsion = 10280.095288 eV Total energy + Delta-G solvation = -2067.938209 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.34615 -37.35781 -34.49715 -32.91358 -30.42497 -27.27752 -26.10067 -24.56505 -22.20274 -21.68188 -21.13001 -18.36515 -16.78003 -16.33884 -15.79343 -15.70180 -15.19014 -14.73171 -14.50833 -13.72297 -13.55951 -13.12337 -12.91456 -12.88285 -12.72227 -12.57411 -12.24401 -12.18736 -12.07221 -11.91750 -11.75889 -11.07961 -10.75594 -10.54480 -10.49711 -8.94674 -8.10232 -6.21844 1.42468 1.43756 1.56804 2.44224 2.86943 3.17993 3.50966 3.94302 3.98204 4.16439 4.32480 4.50406 4.52559 4.58220 4.72810 4.76845 4.82621 4.89056 4.92298 5.01173 5.09469 5.18127 5.26946 5.30008 5.36316 5.43309 5.54770 5.68165 5.80967 6.26278 6.64712 6.83276 6.94269 7.48499 8.95825 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.076681 B = 0.006087 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.061317 B = 4598.710602 C = 4778.967409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.141 4.141 4 H 0.099 0.901 5 C -0.169 4.169 6 C -0.151 4.151 7 H 0.105 0.895 8 C 0.095 3.905 9 N -0.686 5.686 10 C 0.213 3.787 11 H -0.002 1.002 12 C -0.155 4.155 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.007 3.993 16 N -0.924 5.924 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.279 1.279 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.018 0.982 29 H 0.049 0.951 30 H 0.332 0.668 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 -10.147 -4.401 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.159 4.159 4 H 0.117 0.883 5 C -0.205 4.205 6 C -0.170 4.170 7 H 0.123 0.877 8 C -0.035 4.035 9 N -0.316 5.316 10 C 0.104 3.896 11 H 0.016 0.984 12 C -0.215 4.215 13 C -0.554 4.554 14 H 0.073 0.927 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.204 1.204 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.122 0.878 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.149 0.851 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.312 -9.696 -4.920 14.985 hybrid contribution 0.703 0.459 0.924 1.249 sum -9.609 -9.237 -3.996 13.915 Atomic orbital electron populations 1.21733 0.94564 1.02167 1.01921 1.21123 0.96660 0.92911 1.02167 1.22565 0.92448 0.98955 1.01965 0.88267 1.23187 1.03640 1.02189 0.91529 1.22277 0.95039 0.99004 1.00665 0.87716 1.21431 0.88601 0.96578 0.96876 1.60650 1.08584 1.05392 1.56971 1.18963 0.94228 0.87904 0.88478 0.98361 1.22227 0.97220 1.01043 1.00968 1.21492 0.98494 1.13289 1.22146 0.92710 1.25756 1.02372 0.95834 0.95125 1.70026 1.38499 1.18905 1.29040 0.85420 0.79681 0.77865 0.78121 1.19272 1.20703 1.20440 0.91641 0.92835 0.92520 0.91354 0.91727 0.89625 0.87777 0.96384 0.93277 0.85079 0.94719 0.91983 0.95748 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.87 71.98 0.71 -1.62 16 2 C -0.09 -1.73 6.22 30.60 0.19 -1.54 16 3 C -0.14 -3.34 5.46 -10.80 -0.06 -3.40 16 4 H 0.10 2.39 8.07 -2.39 -0.02 2.37 16 5 C -0.17 -4.32 9.82 30.59 0.30 -4.02 16 6 C -0.15 -4.46 5.67 -10.80 -0.06 -4.52 16 7 H 0.10 3.03 8.13 -2.39 -0.02 3.01 16 8 C 0.09 3.54 5.76 86.30 0.50 4.04 16 9 N -0.69 -30.32 6.23 -495.44 -3.09 -33.41 16 10 C 0.21 11.21 2.57 44.17 0.11 11.32 16 11 H 0.00 -0.09 7.80 -2.39 -0.02 -0.11 16 12 C -0.16 -7.69 8.94 71.98 0.64 -7.05 16 13 C -0.52 -29.52 8.84 25.60 0.23 -29.29 16 14 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 15 C 0.01 0.40 5.30 84.65 0.45 0.85 16 16 N -0.92 -54.34 11.34 21.45 0.24 -54.10 16 17 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.07 1.22 7.88 -2.39 -0.02 1.20 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 2.30 8.03 -2.39 -0.02 2.28 16 27 H 0.10 2.34 8.03 -2.38 -0.02 2.32 16 28 H 0.02 0.68 7.44 -2.39 -0.02 0.66 16 29 H 0.05 1.95 7.79 -2.38 -0.02 1.93 16 30 H 0.33 13.70 8.46 -89.69 -0.76 12.94 16 31 H 0.03 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.06 3.42 6.09 -2.38 -0.01 3.40 16 33 H 0.02 1.07 7.45 -2.39 -0.02 1.05 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -60.60 278.88 2.48 -58.11 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.29 Total: 17.92 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 3.01 Total: -35.24 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.84 Total: -87.51 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -60.60 2.48 -58.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387853165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.536 kcal (2) G-P(sol) polarization free energy of solvation -60.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds