Wall clock time and date at job start Sun Mar 29 2020 21:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 112.90456 * 2 1 4 4 C 1.53777 * 113.61674 * 228.75549 * 2 1 3 5 5 C 1.53786 * 87.07891 * 270.88047 * 4 2 1 6 6 C 1.53775 * 87.08009 * 334.56607 * 5 4 2 7 7 H 1.08997 * 113.61739 * 270.79685 * 6 5 4 8 8 N 1.46906 * 113.61468 * 139.97981 * 6 5 4 9 9 C 1.46901 * 110.99793 * 104.50299 * 8 6 5 10 10 C 1.53000 * 109.46769 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47171 * 89.99544 * 15 13 11 17 17 H 1.48500 * 109.46632 * 209.99795 * 15 13 11 18 18 H 1.48494 * 109.47053 * 329.99231 * 15 13 11 19 19 H 1.08995 * 109.47033 * 288.74779 * 1 2 3 20 20 H 1.08999 * 109.47236 * 48.74613 * 1 2 3 21 21 H 1.09002 * 109.46842 * 168.74305 * 1 2 3 22 22 H 1.09003 * 109.47010 * 191.24916 * 3 2 1 23 23 H 1.08997 * 109.47424 * 311.25313 * 3 2 1 24 24 H 1.09003 * 109.47033 * 71.25499 * 3 2 1 25 25 H 1.09000 * 113.62103 * 156.33344 * 4 2 1 26 26 H 1.09006 * 113.69151 * 25.43532 * 4 2 1 27 27 H 1.08996 * 113.61202 * 220.01535 * 5 4 2 28 28 H 1.08998 * 113.61379 * 89.11614 * 5 4 2 29 29 H 1.00899 * 110.99995 * 228.45902 * 8 6 5 30 30 H 1.09001 * 109.46874 * 60.00179 * 9 8 6 31 31 H 1.08992 * 109.47407 * 300.00197 * 9 8 6 32 32 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 33 33 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 34 34 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9289 -1.0594 5 6 2.0930 -2.0425 -0.0001 6 6 2.1461 -0.9291 1.0593 7 1 3.1590 -0.6509 1.3500 8 7 1.2680 -1.1712 2.2119 9 6 2.0437 -1.5977 3.3842 10 6 1.0972 -1.8389 4.5617 11 6 1.8930 -2.2759 5.7646 12 1 2.9665 -2.3714 5.6961 13 6 1.2506 -2.5536 6.9525 14 7 -0.0567 -2.4367 7.0361 15 14 2.2371 -3.0945 8.4437 16 1 2.6420 -1.9009 9.2289 17 1 1.4047 -3.9856 9.2912 18 1 3.4488 -3.8271 7.9963 19 1 -0.3633 0.3303 0.9731 20 1 -0.3634 0.6776 -0.7726 21 1 -0.3633 -1.0079 -0.2006 22 1 3.1954 1.3518 -0.2005 23 1 1.6427 2.0079 -0.7726 24 1 1.9627 1.8726 0.9732 25 1 3.1591 -0.6497 -1.3491 26 1 1.4956 -1.1092 -1.9153 27 1 2.9718 -2.6873 -0.0002 28 1 1.1570 -2.6009 -0.0001 29 1 0.7142 -0.3544 2.4223 30 1 2.7605 -0.8200 3.6481 31 1 2.5769 -2.5193 3.1514 32 1 0.5643 -0.9170 4.7944 33 1 0.3801 -2.6164 4.2981 34 1 -0.5088 -2.6324 7.8717 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388406216.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:47 Heat of formation + Delta-G solvation = -2.760155 kcal Electronic energy + Delta-G solvation = -12618.851253 eV Core-core repulsion = 10551.382168 eV Total energy + Delta-G solvation = -2067.469085 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.65645 -34.68955 -32.50971 -30.48231 -28.89910 -27.33774 -24.74457 -22.95015 -22.01020 -20.47259 -17.89225 -16.31859 -15.62609 -14.98786 -14.48965 -14.36857 -13.66692 -13.16262 -13.04275 -12.30209 -12.21236 -12.03891 -11.88164 -11.37542 -11.29127 -10.94476 -10.91825 -10.66255 -10.49453 -10.13831 -9.90711 -9.81235 -9.22711 -9.07506 -8.32759 -7.72841 -5.97252 -3.99640 3.33514 3.39528 3.43225 4.45750 4.58060 4.71561 4.77316 5.13752 5.21177 5.33906 5.38591 5.62402 5.69180 5.78811 5.82478 5.90185 5.95892 6.08078 6.16266 6.20197 6.35147 6.37911 6.48353 6.65481 6.68419 7.04387 7.59060 7.78433 7.88601 8.03746 8.13555 8.47518 9.07808 9.63955 11.14230 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066821 B = 0.006463 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.930491 B = 4331.182419 C = 4417.230386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.127 4.127 6 C 0.067 3.933 7 H 0.063 0.937 8 N -0.677 5.677 9 C 0.065 3.935 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 H 0.061 0.939 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.335 0.665 30 H 0.013 0.987 31 H 0.057 0.943 32 H 0.012 0.988 33 H 0.025 0.975 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.106 4.986 -14.038 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.092 4.092 3 C -0.195 4.195 4 C -0.172 4.172 5 C -0.165 4.165 6 C -0.044 4.044 7 H 0.081 0.919 8 N -0.309 5.309 9 C -0.063 4.063 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 H 0.080 0.920 20 H 0.068 0.932 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.155 0.845 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.803 4.322 -14.087 14.999 hybrid contribution 0.982 0.529 1.219 1.652 sum 3.785 4.851 -12.868 14.264 Atomic orbital electron populations 1.21440 0.92663 1.01999 1.01550 1.22086 0.96292 0.93939 0.96907 1.21766 1.00182 0.95929 1.01582 1.22936 1.00367 0.97276 0.96627 1.22977 1.02168 0.96289 0.95054 1.23074 0.95364 0.95475 0.90440 0.91905 1.60780 1.24884 1.39231 1.05961 1.22185 0.96039 0.97933 0.90161 1.19066 0.94505 0.97235 0.90410 1.21197 0.93598 1.45525 0.95661 0.92811 1.25005 0.94870 0.95661 0.98850 1.69975 1.07670 1.49322 1.26362 0.86590 0.80025 0.78553 0.82804 1.20719 1.21186 1.19896 0.91985 0.93248 0.91904 0.92850 0.92789 0.92685 0.90701 0.91613 0.92301 0.89410 0.84546 0.96890 0.92493 0.96926 0.95681 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 8.47 37.16 0.31 -1.15 16 2 C -0.09 -1.15 1.28 -153.70 -0.20 -1.34 16 3 C -0.14 -1.54 9.20 37.16 0.34 -1.20 16 4 C -0.13 -1.55 7.19 -25.92 -0.19 -1.73 16 5 C -0.13 -1.75 7.53 -25.92 -0.20 -1.94 16 6 C 0.07 1.02 3.56 -66.90 -0.24 0.78 16 7 H 0.06 0.99 7.85 -51.93 -0.41 0.58 16 8 N -0.68 -12.45 6.01 -105.87 -0.64 -13.09 16 9 C 0.07 1.42 5.49 -3.82 -0.02 1.40 16 10 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 11 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 15 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H 0.06 0.81 6.79 -51.93 -0.35 0.46 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.81 7.34 -51.93 -0.38 0.43 16 22 H 0.05 0.57 7.94 -51.93 -0.41 0.15 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 26 H 0.07 0.70 8.10 -51.93 -0.42 0.27 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.28 7.65 -51.93 -0.40 0.89 16 29 H 0.34 6.01 7.09 -39.29 -0.28 5.73 16 30 H 0.01 0.28 8.13 -51.93 -0.42 -0.14 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 274.57 15.07 4.14 4.14 Total: -1.00 -29.91 274.57 -7.51 -37.41 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.99 Total: -0.29 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -0.74 Total: -18.51 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.10 Total: -39.71 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.91 -7.51 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388406216.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.654 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds