Wall clock time and date at job start Sun Mar 29 2020 21:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47308 * 2 1 4 4 H 1.08998 * 109.46889 * 305.00435 * 3 2 1 5 5 N 1.46504 * 109.46551 * 64.99923 * 3 2 1 6 6 C 1.36933 * 119.99980 * 253.10072 * 5 3 2 7 7 H 1.08000 * 120.00318 * 0.02562 * 6 5 3 8 8 C 1.38811 * 119.99758 * 180.02562 * 6 5 3 9 9 N 1.31620 * 120.00037 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99862 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47044 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47108 * 120.00168 * 10 8 6 13 13 H 1.48501 * 109.46877 * 239.99879 * 10 8 6 14 14 C 1.52995 * 109.47280 * 185.00000 * 3 2 1 15 15 H 1.09000 * 115.55083 * 322.08323 * 14 3 2 16 16 C 1.52996 * 117.49811 * 176.40982 * 14 3 2 17 17 C 1.52998 * 60.00199 * 252.51261 * 16 14 3 18 18 C 1.53001 * 117.49843 * 252.51333 * 17 16 14 19 19 C 1.52998 * 117.50172 * 107.49010 * 17 16 14 20 20 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47176 * 299.99847 * 1 2 3 22 22 H 1.09008 * 109.47050 * 59.99275 * 1 2 3 23 23 H 1.09000 * 109.46792 * 240.00530 * 2 1 3 24 24 H 1.08996 * 109.47195 * 120.00284 * 2 1 3 25 25 H 0.96998 * 119.99550 * 73.10993 * 5 3 2 26 26 H 0.97007 * 119.99790 * 179.97438 * 9 8 6 27 27 H 1.08998 * 117.50376 * 0.02562 * 16 14 3 28 28 H 1.09007 * 117.49701 * 145.00163 * 16 14 3 29 29 H 1.08997 * 109.47303 * 128.61797 * 18 17 16 30 30 H 1.08999 * 109.47240 * 248.61841 * 18 17 16 31 31 H 1.09003 * 109.47532 * 8.61621 * 18 17 16 32 32 H 1.09007 * 109.46970 * 351.37769 * 19 17 16 33 33 H 1.09001 * 109.47301 * 111.37507 * 19 17 16 34 34 H 1.08993 * 109.47233 * 231.38353 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.6559 3.0365 1.2533 7 1 0.1553 3.2942 0.3316 8 6 0.2890 3.6574 2.4393 9 7 0.8993 3.3438 3.5625 10 14 -1.0710 4.9380 2.4414 11 1 -1.5921 5.1089 1.0613 12 1 -2.1702 4.4913 3.3344 13 1 -0.5313 6.2324 2.9300 14 6 3.5648 1.4444 -0.1257 15 1 4.0821 0.6519 0.4151 16 6 4.2635 2.8015 -0.2291 17 6 4.1632 1.8972 -1.4591 18 6 5.4420 1.2028 -1.9316 19 6 3.1909 2.3135 -2.5647 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.1018 1.8658 2.0797 26 1 0.6432 3.7780 4.3913 27 1 3.6370 3.6932 -0.2071 28 1 5.2405 2.9020 0.2438 29 1 5.2543 0.1355 -2.0479 30 1 5.7517 1.6236 -2.8883 31 1 6.2314 1.3548 -1.1954 32 1 2.5868 3.1529 -2.2201 33 1 3.7531 2.6098 -3.4503 34 1 2.5402 1.4746 -2.8111 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591377438.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:27 Heat of formation + Delta-G solvation = -3.225487 kcal Electronic energy + Delta-G solvation = -13048.153260 eV Core-core repulsion = 10980.663996 eV Total energy + Delta-G solvation = -2067.489263 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.91497 -36.61919 -34.20649 -31.63080 -30.05589 -28.47798 -27.33437 -25.01950 -22.45737 -21.26609 -19.78524 -18.83182 -16.81116 -16.01917 -15.78225 -15.32888 -14.89674 -14.56015 -14.42153 -13.88774 -13.42424 -13.06108 -12.93378 -12.88776 -12.83511 -12.57849 -12.16241 -12.11793 -12.03892 -11.94636 -11.48814 -11.28969 -10.99888 -10.55600 -10.31365 -8.91813 -7.87867 -5.13101 1.46310 1.46558 1.55888 2.57149 2.92189 3.45972 3.78081 3.91667 4.09281 4.24691 4.33985 4.44389 4.56817 4.60804 4.75486 4.84946 4.87807 5.04560 5.11027 5.12277 5.13302 5.16612 5.19452 5.30085 5.34280 5.40086 5.54764 5.56973 5.65251 5.68810 6.34164 7.40066 8.19332 8.42462 9.36063 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036884 B = 0.010384 C = 0.009474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.946433 B = 2695.691008 C = 2954.643785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.197 3.803 4 H 0.056 0.944 5 N -0.725 5.725 6 C -0.215 4.215 7 H 0.070 0.930 8 C -0.080 4.080 9 N -0.971 5.971 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.297 1.297 13 H -0.298 1.298 14 C -0.158 4.158 15 H 0.094 0.906 16 C -0.170 4.170 17 C -0.112 4.112 18 C -0.108 4.108 19 C -0.113 4.113 20 H 0.057 0.943 21 H 0.034 0.966 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.369 0.631 26 H 0.247 0.753 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 -5.225 -11.956 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.089 3.911 4 H 0.074 0.926 5 N -0.363 5.363 6 C -0.347 4.347 7 H 0.088 0.912 8 C -0.272 4.272 9 N -0.623 5.623 10 Si 0.792 3.208 11 H -0.192 1.192 12 H -0.224 1.224 13 H -0.225 1.225 14 C -0.178 4.178 15 H 0.112 0.888 16 C -0.208 4.208 17 C -0.113 4.113 18 C -0.165 4.165 19 C -0.170 4.170 20 H 0.076 0.924 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.063 0.937 25 H 0.200 0.800 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.598 -5.104 -12.054 14.237 hybrid contribution -0.671 0.837 1.085 1.526 sum 4.927 -4.266 -10.969 12.759 Atomic orbital electron populations 1.21575 0.96395 1.00451 1.01001 1.21973 0.95968 0.97869 1.00798 1.20105 0.90295 0.92185 0.88547 0.92565 1.42517 1.41866 1.46301 1.05637 1.19570 1.09440 1.12358 0.93370 0.91165 1.25410 1.02870 1.03267 0.95632 1.69826 1.46262 1.47676 0.98527 0.85232 0.79181 0.78918 0.77502 1.19169 1.22416 1.22549 1.22892 0.96149 0.97862 1.00874 0.88770 1.22972 1.01032 0.94348 1.02427 1.21724 0.98752 1.01852 0.88969 1.21339 0.93565 1.00158 1.01419 1.21351 0.98000 1.00679 0.96986 0.92386 0.94686 0.93447 0.90764 0.93733 0.79984 0.94451 0.91483 0.89207 0.91482 0.90818 0.92637 0.94238 0.90485 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.71 71.98 0.70 -4.20 16 2 C -0.13 -4.40 5.60 30.60 0.17 -4.23 16 3 C 0.20 7.78 2.38 44.99 0.11 7.88 16 4 H 0.06 2.28 5.72 -2.39 -0.01 2.26 16 5 N -0.73 -36.45 4.46 -322.94 -1.44 -37.90 16 6 C -0.22 -11.88 9.25 84.03 0.78 -11.10 16 7 H 0.07 3.78 7.70 -2.91 -0.02 3.76 16 8 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 9 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 10 Si 0.96 47.03 29.55 68.60 2.03 49.06 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 13 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 14 C -0.16 -5.43 5.03 -10.80 -0.05 -5.48 16 15 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 16 C -0.17 -5.91 9.47 30.59 0.29 -5.62 16 17 C -0.11 -3.15 2.70 -52.18 -0.14 -3.29 16 18 C -0.11 -2.30 9.85 71.98 0.71 -1.59 16 19 C -0.11 -2.96 8.36 71.98 0.60 -2.36 16 20 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.03 1.51 7.24 -2.39 -0.02 1.50 16 22 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.37 20.40 8.01 -92.71 -0.74 19.66 16 26 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 27 H 0.07 2.71 8.05 -2.39 -0.02 2.70 16 28 H 0.09 2.89 8.05 -2.38 -0.02 2.87 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.31 7.92 -2.39 -0.02 1.29 16 31 H 0.05 1.17 7.90 -2.39 -0.02 1.15 16 32 H 0.04 1.19 7.36 -2.38 -0.02 1.17 16 33 H 0.08 1.62 7.92 -2.39 -0.02 1.60 16 34 H 0.06 1.60 8.06 -2.39 -0.02 1.58 16 Total: -1.00 -62.11 277.35 4.80 -57.30 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.31 Total: 25.76 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 3.63 Total: -34.17 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -1.16 Total: -97.95 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -62.11 4.80 -57.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591377438.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.078 kcal (2) G-P(sol) polarization free energy of solvation -62.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds