Wall clock time and date at job start Sun Mar 29 2020 21:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.85153 * 2 1 4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3 5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2 7 7 N 1.46902 * 109.46626 * 176.52548 * 6 5 4 8 8 C 1.46905 * 110.99800 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47194 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99684 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00018 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00089 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46869 * 59.99995 * 13 11 9 15 15 H 1.48505 * 109.47224 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46959 * 299.99808 * 13 11 9 17 17 C 1.53777 * 87.17394 * 25.38935 * 5 4 2 18 18 H 1.09007 * 109.47013 * 288.80594 * 1 2 3 19 19 H 1.08998 * 109.47014 * 48.80014 * 1 2 3 20 20 H 1.08998 * 109.47348 * 168.80291 * 1 2 3 21 21 H 1.08999 * 109.46898 * 191.19448 * 3 2 1 22 22 H 1.08997 * 109.47016 * 311.19487 * 3 2 1 23 23 H 1.08996 * 109.46824 * 71.19568 * 3 2 1 24 24 H 1.08992 * 113.61445 * 334.56320 * 4 2 1 25 25 H 1.09001 * 113.61082 * 203.66197 * 4 2 1 26 26 H 1.08998 * 113.61602 * 270.79563 * 5 4 2 27 27 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 28 28 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 29 29 H 1.00898 * 110.99915 * 56.05185 * 7 6 5 30 30 H 1.09002 * 109.47091 * 300.00139 * 8 7 6 31 31 H 1.09001 * 109.46854 * 60.00166 * 8 7 6 32 32 H 0.97003 * 120.00178 * 180.02562 * 12 11 9 33 33 H 1.08999 * 113.61825 * 89.16304 * 17 5 4 34 34 H 1.09009 * 113.61337 * 220.05752 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0929 -2.0426 0.0020 6 6 3.3264 -2.9479 0.0029 7 7 3.1444 -4.0242 -0.9801 8 6 4.3117 -4.9158 -1.0066 9 6 4.0893 -6.0044 -2.0247 10 1 3.1727 -6.0310 -2.5952 11 6 5.0559 -6.9663 -2.2277 12 7 6.1719 -6.9341 -1.5326 13 14 4.7806 -8.3153 -3.4902 14 1 4.5926 -7.7068 -4.8317 15 1 5.9605 -9.2166 -3.5169 16 1 3.5701 -9.0945 -3.1259 17 6 2.1448 -0.9318 -1.0601 18 1 -0.3633 0.3313 0.9729 19 1 -0.3633 0.6769 -0.7732 20 1 -0.3634 -1.0081 -0.1995 21 1 3.1943 1.3532 -0.1995 22 1 1.6416 2.0076 -0.7733 23 1 1.9600 1.8733 0.9728 24 1 1.4945 -1.1068 1.9156 25 1 3.1590 -0.6487 1.3496 26 1 1.1573 -2.6019 0.0035 27 1 4.2073 -2.3618 -0.2587 28 1 3.4590 -3.3802 0.9947 29 1 2.9553 -3.6482 -1.8971 30 1 5.1998 -4.3436 -1.2751 31 1 4.4507 -5.3617 -0.0218 32 1 6.8522 -7.6106 -1.6756 33 1 3.1575 -0.6534 -1.3517 34 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591762883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:13 Heat of formation + Delta-G solvation = -23.231102 kcal Electronic energy + Delta-G solvation = -12426.219300 eV Core-core repulsion = 10357.862528 eV Total energy + Delta-G solvation = -2068.356772 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.70031 -36.89675 -34.58199 -31.96424 -28.98846 -28.23566 -26.63931 -25.96470 -23.39876 -21.47453 -19.12397 -18.57352 -16.90095 -16.57300 -15.75685 -15.44638 -15.26089 -14.72071 -14.48469 -14.04513 -13.60057 -13.51308 -13.21836 -12.89085 -12.65930 -12.62600 -12.58926 -12.22457 -12.07799 -11.64992 -11.43305 -11.27009 -10.88312 -10.70531 -10.65441 -9.14104 -8.23772 -6.35995 1.40699 1.44977 1.53084 2.39649 3.09123 3.47265 3.63587 3.76892 3.84861 4.01795 4.35062 4.52323 4.58474 4.73590 4.81248 4.83129 4.90232 4.93088 4.99031 5.04578 5.06538 5.11154 5.22037 5.24951 5.29372 5.36631 5.57664 5.61565 5.72709 6.00713 6.44058 6.71501 6.87849 7.35327 8.87918 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.078035 B = 0.005873 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.726518 B = 4766.051747 C = 4898.573025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.133 4.133 4 C -0.122 4.122 5 C -0.104 4.104 6 C 0.070 3.930 7 N -0.688 5.688 8 C 0.207 3.793 9 C -0.539 4.539 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.977 3.023 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.131 4.131 18 H 0.066 0.934 19 H 0.065 0.935 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.013 0.987 28 H 0.051 0.949 29 H 0.334 0.666 30 H -0.042 1.042 31 H -0.003 1.003 32 H 0.266 0.734 33 H 0.070 0.930 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 14.321 2.376 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.081 4.081 3 C -0.190 4.190 4 C -0.160 4.160 5 C -0.123 4.123 6 C -0.060 4.060 7 N -0.318 5.318 8 C 0.079 3.921 9 C -0.577 4.577 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.801 3.199 14 H -0.190 1.190 15 H -0.206 1.206 16 H -0.192 1.192 17 C -0.168 4.168 18 H 0.085 0.915 19 H 0.084 0.916 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.151 0.849 30 H -0.024 1.024 31 H 0.016 0.984 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.617 13.835 2.847 17.088 hybrid contribution 1.123 -0.394 -0.831 1.452 sum -8.493 13.441 2.016 16.027 Atomic orbital electron populations 1.21595 0.92329 1.01953 1.02478 1.21771 0.96140 0.94458 0.95765 1.21713 1.00183 0.94870 1.02269 1.23060 1.01212 0.95118 0.96630 1.22487 0.97556 0.93875 0.98346 1.21944 0.96381 0.91688 0.95946 1.60556 1.40751 1.19597 1.10899 1.19216 0.86353 0.91078 0.95483 1.21531 1.03351 1.11329 1.21531 0.91670 1.26009 0.94498 1.00680 0.98599 1.70095 1.08390 1.36452 1.42625 0.85328 0.77751 0.78010 0.78851 1.18979 1.20640 1.19228 1.23187 1.00706 0.96026 0.96887 0.91484 0.91637 0.92929 0.93154 0.91936 0.91730 0.90740 0.90392 0.89149 0.96878 0.93011 0.84904 1.02428 0.98449 0.92538 0.91101 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.07 71.98 0.65 -1.60 16 2 C -0.08 -1.67 1.39 -51.59 -0.07 -1.74 16 3 C -0.13 -2.34 9.20 71.98 0.66 -1.68 16 4 C -0.12 -2.85 6.79 31.12 0.21 -2.64 16 5 C -0.10 -3.01 3.54 -10.27 -0.04 -3.04 16 6 C 0.07 2.64 5.51 86.31 0.48 3.12 16 7 N -0.69 -31.41 6.49 -517.91 -3.36 -34.77 16 8 C 0.21 11.66 5.44 85.56 0.47 12.13 16 9 C -0.54 -31.85 9.32 25.60 0.24 -31.61 16 10 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 11 C 0.00 0.02 5.46 84.65 0.46 0.48 16 12 N -0.94 -57.91 13.29 21.45 0.28 -57.62 16 13 Si 0.98 44.99 29.54 68.60 2.03 47.02 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 C -0.13 -3.31 6.76 31.18 0.21 -3.10 16 18 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 19 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.05 1.02 7.34 -2.39 -0.02 1.00 16 21 H 0.05 0.94 7.96 -2.39 -0.02 0.92 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 25 H 0.08 1.83 8.06 -2.39 -0.02 1.81 16 26 H 0.09 2.71 7.66 -2.39 -0.02 2.69 16 27 H 0.01 0.50 7.87 -2.39 -0.02 0.48 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.33 14.46 8.72 -89.70 -0.78 13.68 16 30 H -0.04 -2.53 8.14 -2.39 -0.02 -2.55 16 31 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.07 1.89 7.75 -2.39 -0.02 1.87 16 34 H 0.07 1.66 8.10 -2.38 -0.02 1.64 16 Total: -1.00 -64.29 277.79 2.48 -61.81 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.26 Total: 13.27 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 3.27 Total: -29.70 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -3.08 Total: -92.39 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.29 2.48 -61.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591762883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.579 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds