Wall clock time and date at job start Sun Mar 29 2020 21:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00093 * 2 1 4 4 H 1.08005 * 120.00217 * 202.34641 * 3 2 1 5 5 C 1.38812 * 120.00129 * 22.34746 * 3 2 1 6 6 N 1.31620 * 119.99772 * 11.34072 * 5 3 2 7 7 Si 1.86799 * 119.99916 * 191.34772 * 5 3 2 8 8 H 1.48497 * 109.47576 * 90.00030 * 7 5 3 9 9 H 1.48506 * 109.46905 * 209.99647 * 7 5 3 10 10 H 1.48497 * 109.47264 * 329.99400 * 7 5 3 11 11 C 1.46500 * 120.00007 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46981 * 269.99656 * 11 2 1 13 13 C 1.53000 * 109.47216 * 179.97438 * 12 11 2 14 14 C 1.52999 * 109.46874 * 180.02562 * 13 12 11 15 15 C 1.53780 * 113.61280 * 274.13616 * 14 13 12 16 16 C 1.53959 * 87.02074 * 220.05066 * 15 14 13 17 17 C 1.53785 * 87.11059 * 25.36382 * 16 15 14 18 18 H 1.08989 * 109.47337 * 274.21263 * 1 2 3 19 19 H 1.09002 * 109.46995 * 34.21303 * 1 2 3 20 20 H 1.08994 * 109.46963 * 154.20477 * 1 2 3 21 21 H 0.96995 * 119.99718 * 180.02562 * 6 5 3 22 22 H 1.09003 * 109.47152 * 150.00254 * 11 2 1 23 23 H 1.09000 * 109.47314 * 29.99420 * 11 2 1 24 24 H 1.09002 * 109.47163 * 300.00496 * 12 11 2 25 25 H 1.09003 * 109.46689 * 60.00315 * 12 11 2 26 26 H 1.09000 * 109.46886 * 300.00205 * 13 12 11 27 27 H 1.08999 * 109.47121 * 60.00177 * 13 12 11 28 28 H 1.08995 * 112.85482 * 45.33258 * 14 13 12 29 29 H 1.09004 * 113.61359 * 334.57009 * 15 14 13 30 30 H 1.08998 * 113.61906 * 105.47290 * 15 14 13 31 31 H 1.08999 * 113.53646 * 270.81142 * 16 15 14 32 32 H 1.09003 * 113.74116 * 139.94418 * 16 15 14 33 33 H 1.08997 * 113.61239 * 220.09576 * 17 16 15 34 34 H 1.08997 * 113.69181 * 89.19421 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3556 5 6 1.5339 2.3429 0.4571 6 7 0.3842 2.2691 1.0936 7 14 2.3368 4.0047 0.1687 8 1 1.8680 4.5632 -1.1249 9 1 1.9682 4.9303 1.2700 10 1 3.8123 3.8419 0.1319 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 6 3.2170 -3.0363 1.4413 14 6 3.4715 -3.4788 2.8836 15 6 4.7434 -2.8718 3.4988 16 6 4.9920 -4.2480 4.1427 17 6 4.1627 -4.8480 2.9950 18 1 -0.3633 0.0755 1.0248 19 1 -0.3633 0.8498 -0.5778 20 1 -0.3633 -0.9252 -0.4472 21 1 -0.0463 3.0776 1.4126 22 1 3.1499 -1.1382 -0.5143 23 1 1.6084 -2.0282 -0.5146 24 1 3.0416 -0.9515 1.9559 25 1 1.5001 -1.8416 1.9555 26 1 2.6275 -3.7955 0.9272 27 1 4.1694 -2.9062 0.9273 28 1 2.5904 -3.3816 3.5179 29 1 5.4953 -2.5929 2.7605 30 1 4.5442 -2.0803 4.2213 31 1 4.5274 -4.3606 5.1223 32 1 6.0379 -4.5548 4.1324 33 1 3.4953 -5.6496 3.3113 34 1 4.7543 -5.1110 2.1181 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595307391.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:16 Heat of formation + Delta-G solvation = 20.467566 kcal Electronic energy + Delta-G solvation = -12610.391318 eV Core-core repulsion = 10543.929463 eV Total energy + Delta-G solvation = -2066.461855 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.76671 -35.77977 -32.77943 -30.55414 -26.92148 -25.72863 -25.46404 -23.40189 -21.17291 -20.01450 -19.14944 -16.61023 -15.48124 -14.89900 -14.38849 -14.27000 -13.47127 -13.16836 -12.56548 -12.31835 -12.15037 -12.00796 -11.17720 -11.08295 -10.90223 -10.73237 -10.57452 -10.39224 -10.29964 -10.05439 -9.93831 -9.90926 -9.56514 -9.52983 -8.46245 -6.64482 -5.63602 -3.08332 3.42882 3.48649 3.50264 4.57191 4.76755 4.80555 4.89343 5.01387 5.48769 5.59199 5.66709 5.75064 5.85499 5.86903 5.91364 5.95534 6.11207 6.20988 6.28980 6.39842 6.55353 6.60971 6.67446 6.73594 6.86169 7.09419 7.27939 7.47799 7.82209 7.88900 8.50082 9.33894 9.98190 10.47529 11.41940 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046199 B = 0.007455 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.928162 B = 3755.201703 C = 4071.273787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.606 5.606 3 C -0.248 4.248 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.911 5.911 7 Si 0.904 3.096 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.152 3.848 12 C -0.135 4.135 13 C -0.107 4.107 14 C -0.108 4.108 15 C -0.136 4.136 16 C -0.144 4.144 17 C -0.140 4.140 18 H 0.026 0.974 19 H 0.043 0.957 20 H -0.005 1.005 21 H 0.251 0.749 22 H 0.039 0.961 23 H 0.033 0.967 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.933 -11.258 2.954 13.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.329 5.329 3 C -0.378 4.378 4 H 0.085 0.915 5 C -0.200 4.200 6 N -0.557 5.557 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.025 3.975 12 C -0.175 4.175 13 C -0.145 4.145 14 C -0.126 4.126 15 C -0.174 4.174 16 C -0.182 4.182 17 C -0.177 4.177 18 H 0.045 0.955 19 H 0.061 0.939 20 H 0.013 0.987 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.816 -11.109 3.002 12.893 hybrid contribution 0.333 1.002 0.068 1.059 sum 6.149 -10.106 3.070 12.222 Atomic orbital electron populations 1.20765 0.82727 0.95353 0.99121 1.43991 1.01895 1.00875 1.86149 1.19240 0.97834 0.85552 1.35194 0.91483 1.25021 0.97816 0.98447 0.98716 1.70072 1.17984 1.26835 1.40838 0.86256 0.78781 0.84258 0.77281 1.21582 1.21804 1.20567 1.20835 0.95330 0.87827 0.93504 1.22201 0.99258 0.95039 1.01014 1.21563 1.00194 0.98067 0.94666 1.22554 0.97199 0.95209 0.97632 1.22982 0.98102 0.96318 0.99986 1.22848 0.99786 0.97505 0.98046 1.22957 0.99088 0.97066 0.98600 0.95543 0.93861 0.98681 0.93901 0.94228 0.94868 0.92112 0.93120 0.92715 0.92534 0.89630 0.90222 0.91690 0.90627 0.91996 0.92072 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.28 9.01 59.85 0.54 4.82 16 2 N -0.61 -16.05 2.93 -181.12 -0.53 -16.58 16 3 C -0.25 -7.10 9.67 -15.06 -0.15 -7.24 16 4 H 0.07 1.87 7.84 -52.48 -0.41 1.46 16 5 C 0.00 -0.07 5.13 -17.43 -0.09 -0.16 16 6 N -0.91 -27.45 10.59 55.49 0.59 -26.87 16 7 Si 0.90 22.47 29.57 -169.99 -5.03 17.44 16 8 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.15 3.29 5.71 -4.04 -0.02 3.26 16 12 C -0.13 -2.63 5.53 -26.73 -0.15 -2.78 16 13 C -0.11 -1.62 5.04 -26.73 -0.13 -1.76 16 14 C -0.11 -1.47 3.64 -89.81 -0.33 -1.80 16 15 C -0.14 -1.78 7.65 -25.83 -0.20 -1.98 16 16 C -0.14 -1.59 8.09 -25.82 -0.21 -1.80 16 17 C -0.14 -1.59 7.65 -25.91 -0.20 -1.79 16 18 H 0.03 0.73 7.42 -51.94 -0.39 0.35 16 19 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 20 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 21 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 23 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.83 7.88 -51.93 -0.41 0.43 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.04 7.92 -51.93 -0.41 0.63 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 275.03 15.07 4.14 4.14 Total: -1.00 -30.05 275.03 -7.92 -37.96 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -6.16 Total: -4.88 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.93 Total: -11.23 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.06 Total: -43.45 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.05 -7.92 -37.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595307391.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.432 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds