Wall clock time and date at job start Sun Mar 29 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99769 * 2 1 4 4 C 1.50703 * 109.47107 * 66.04798 * 3 2 1 5 5 H 1.07996 * 119.99751 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00001 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99923 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 120.00006 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47093 * 90.00088 * 8 6 4 10 10 H 1.48500 * 109.47049 * 210.00797 * 8 6 4 11 11 H 1.48504 * 109.47189 * 330.00185 * 8 6 4 12 12 C 1.46896 * 110.99805 * 236.04721 * 2 1 3 13 13 C 1.53005 * 109.47355 * 293.95002 * 12 2 1 14 14 H 1.09000 * 115.54490 * 29.42157 * 13 12 2 15 15 C 1.52993 * 117.49876 * 243.74836 * 13 12 2 16 16 C 1.53001 * 117.49829 * 175.08591 * 13 12 2 17 17 C 1.53000 * 117.49868 * 214.97962 * 16 13 12 18 18 C 1.53001 * 117.49953 * 0.02562 * 16 13 12 19 19 H 1.08995 * 109.47407 * 59.99898 * 1 2 3 20 20 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46848 * 299.99626 * 1 2 3 22 22 H 1.09002 * 109.47043 * 186.04778 * 3 2 1 23 23 H 1.09001 * 109.47354 * 306.04839 * 3 2 1 24 24 H 0.97000 * 119.99684 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.47466 * 53.95276 * 12 2 1 26 26 H 1.09000 * 109.46995 * 173.95474 * 12 2 1 27 27 H 1.08995 * 117.50057 * 0.02562 * 15 13 12 28 28 H 1.09003 * 117.49629 * 144.99720 * 15 13 12 29 29 H 1.08999 * 109.46611 * 60.00518 * 17 16 13 30 30 H 1.08999 * 109.47168 * 180.02562 * 17 16 13 31 31 H 1.09004 * 109.47180 * 300.00724 * 17 16 13 32 32 H 1.08996 * 109.47069 * 59.99483 * 18 16 13 33 33 H 1.08997 * 109.47068 * 179.97438 * 18 16 13 34 34 H 1.09005 * 109.46782 * 299.99586 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0267 3.3495 1.5285 7 7 1.7143 3.9389 2.6619 8 14 2.9999 4.2762 0.2309 9 1 2.0632 4.9798 -0.6816 10 1 3.8863 5.2679 0.8914 11 1 3.8239 3.3176 -0.5484 12 6 1.9955 -0.7659 -1.1376 13 6 1.6315 -2.2427 -0.9703 14 1 0.7099 -2.4406 -0.4230 15 6 2.7806 -3.2388 -0.8028 16 6 1.9920 -3.1929 -2.1140 17 6 1.0316 -4.3488 -2.4014 18 6 2.6893 -2.5940 -3.3371 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 3.0797 1.3444 -0.1083 23 1 1.5611 1.9274 -0.8309 24 1 1.9882 4.8553 2.8235 25 1 1.5611 -0.3872 -2.0629 26 1 3.0797 -0.6611 -1.1756 27 1 3.7958 -2.8422 -0.8113 28 1 2.6150 -4.0922 -0.1452 29 1 0.0497 -3.9502 -2.6567 30 1 1.4124 -4.9390 -3.2349 31 1 0.9485 -4.9806 -1.5171 32 1 3.6320 -2.1400 -3.0318 33 1 2.8844 -3.3808 -4.0657 34 1 2.0484 -1.8344 -3.7849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595914415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:59 Heat of formation + Delta-G solvation = 18.597510 kcal Electronic energy + Delta-G solvation = -12681.461876 eV Core-core repulsion = 10614.918929 eV Total energy + Delta-G solvation = -2066.542947 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.75711 -36.01952 -32.42875 -29.66363 -27.96837 -27.67337 -26.41190 -23.86838 -20.90719 -19.93065 -18.44528 -16.82070 -15.23916 -14.80976 -14.51311 -14.04366 -13.82762 -13.45115 -12.85224 -12.61560 -12.33836 -12.15838 -11.98379 -11.75448 -11.36726 -11.23210 -10.97009 -10.86870 -10.67979 -10.11272 -9.85618 -9.58812 -9.32207 -9.19779 -8.55510 -7.31074 -6.03069 -3.99986 3.29330 3.36813 3.39239 3.86766 4.43817 4.65577 4.85788 5.04561 5.08119 5.23571 5.32134 5.61998 5.64089 5.75300 5.86383 5.93321 5.97172 6.02594 6.03866 6.08214 6.15087 6.20314 6.33319 6.39013 6.58195 6.76032 6.87610 7.02618 7.63319 7.95658 8.10351 8.69598 9.05870 9.58903 11.10188 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.057185 B = 0.007704 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.521298 B = 3633.534225 C = 3870.417790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.084 3.916 13 C -0.128 4.128 14 H 0.106 0.894 15 C -0.167 4.167 16 C -0.140 4.140 17 C -0.111 4.111 18 C -0.113 4.113 19 H 0.010 0.990 20 H 0.049 0.951 21 H 0.077 0.923 22 H 0.027 0.973 23 H -0.017 1.017 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 -12.711 -10.731 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.044 4.044 13 C -0.147 4.147 14 H 0.124 0.876 15 C -0.204 4.204 16 C -0.141 4.141 17 C -0.168 4.168 18 C -0.170 4.170 19 H 0.029 0.971 20 H 0.067 0.933 21 H 0.096 0.904 22 H 0.045 0.955 23 H 0.000 1.000 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.609 -12.753 -10.196 16.339 hybrid contribution 0.266 1.049 -1.287 1.681 sum 0.875 -11.704 -11.482 16.419 Atomic orbital electron populations 1.22271 0.88450 0.99489 1.00998 1.61907 1.07313 1.16156 1.39993 1.20194 0.95144 0.84144 0.96976 1.21053 1.35426 0.97174 1.00946 0.90111 1.24902 0.95793 0.97362 0.95333 1.69895 1.47035 1.13214 1.23903 0.86860 0.80655 0.80035 0.82185 1.20377 1.21119 1.19226 1.21628 0.99447 0.91000 0.92328 1.22499 0.99632 0.92011 1.00539 0.87574 1.23242 0.96817 1.01791 0.98500 1.21638 1.01944 0.99822 0.90649 1.21314 0.98156 0.96076 1.01282 1.21303 0.99737 1.00134 0.95824 0.97103 0.93278 0.90394 0.95493 0.99959 0.92695 0.95651 0.91498 0.89006 0.89277 0.92492 0.92528 0.92629 0.92436 0.92630 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.19 60.07 0.55 1.27 16 2 N -0.53 -11.56 4.75 -244.36 -1.16 -12.72 16 3 C 0.16 4.06 3.79 -4.98 -0.02 4.04 16 4 C -0.51 -14.76 9.07 -34.44 -0.31 -15.07 16 5 H 0.08 2.55 7.35 -52.49 -0.39 2.16 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 8 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 12 C 0.08 1.51 4.32 -3.82 -0.02 1.49 16 13 C -0.13 -1.93 5.39 -90.62 -0.49 -2.42 16 14 H 0.11 1.64 6.35 -51.93 -0.33 1.31 16 15 C -0.17 -2.22 9.47 -26.70 -0.25 -2.47 16 16 C -0.14 -1.73 2.70 -154.47 -0.42 -2.15 16 17 C -0.11 -1.16 9.85 37.16 0.37 -0.79 16 18 C -0.11 -1.29 8.86 37.16 0.33 -0.96 16 19 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 20 H 0.05 0.83 6.22 -51.93 -0.32 0.51 16 21 H 0.08 1.70 6.86 -51.93 -0.36 1.35 16 22 H 0.03 0.68 6.99 -51.93 -0.36 0.32 16 23 H -0.02 -0.43 7.55 -51.93 -0.39 -0.82 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.03 0.45 7.75 -51.93 -0.40 0.04 16 26 H 0.07 1.20 7.66 -51.93 -0.40 0.80 16 27 H 0.09 1.23 7.94 -51.93 -0.41 0.82 16 28 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 31 H 0.05 0.55 7.90 -51.93 -0.41 0.14 16 32 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 33 H 0.05 0.54 7.92 -51.93 -0.41 0.13 16 34 H 0.06 0.67 7.84 -51.93 -0.41 0.27 16 LS Contribution 271.85 15.07 4.10 4.10 Total: -1.00 -30.47 271.85 -7.16 -37.63 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.84 Total: -3.81 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -0.36 Total: -15.18 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.39 Total: -39.91 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.47 -7.16 -37.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595914415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.226 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds