Wall clock time and date at job start Sun Mar 29 2020 21:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99769 * 2 1 4 4 C 1.50703 * 109.47107 * 66.04798 * 3 2 1 5 5 H 1.07996 * 119.99751 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00001 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99923 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 120.00006 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47093 * 90.00088 * 8 6 4 10 10 H 1.48500 * 109.47049 * 210.00797 * 8 6 4 11 11 H 1.48504 * 109.47189 * 330.00185 * 8 6 4 12 12 C 1.46896 * 110.99805 * 236.04721 * 2 1 3 13 13 C 1.53005 * 109.47355 * 293.95002 * 12 2 1 14 14 H 1.09000 * 115.54490 * 29.42157 * 13 12 2 15 15 C 1.52993 * 117.49876 * 243.74836 * 13 12 2 16 16 C 1.53001 * 117.49829 * 175.08591 * 13 12 2 17 17 C 1.53000 * 117.49868 * 214.97962 * 16 13 12 18 18 C 1.53001 * 117.49953 * 0.02562 * 16 13 12 19 19 H 1.08995 * 109.47407 * 59.99898 * 1 2 3 20 20 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46848 * 299.99626 * 1 2 3 22 22 H 1.09002 * 109.47043 * 186.04778 * 3 2 1 23 23 H 1.09001 * 109.47354 * 306.04839 * 3 2 1 24 24 H 0.97000 * 119.99684 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.47466 * 53.95276 * 12 2 1 26 26 H 1.09000 * 109.46995 * 173.95474 * 12 2 1 27 27 H 1.08995 * 117.50057 * 0.02562 * 15 13 12 28 28 H 1.09003 * 117.49629 * 144.99720 * 15 13 12 29 29 H 1.08999 * 109.46611 * 60.00518 * 17 16 13 30 30 H 1.08999 * 109.47168 * 180.02562 * 17 16 13 31 31 H 1.09004 * 109.47180 * 300.00724 * 17 16 13 32 32 H 1.08996 * 109.47069 * 59.99483 * 18 16 13 33 33 H 1.08997 * 109.47068 * 179.97438 * 18 16 13 34 34 H 1.09005 * 109.46782 * 299.99586 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0267 3.3495 1.5285 7 7 1.7143 3.9389 2.6619 8 14 2.9999 4.2762 0.2309 9 1 2.0632 4.9798 -0.6816 10 1 3.8863 5.2679 0.8914 11 1 3.8239 3.3176 -0.5484 12 6 1.9955 -0.7659 -1.1376 13 6 1.6315 -2.2427 -0.9703 14 1 0.7099 -2.4406 -0.4230 15 6 2.7806 -3.2388 -0.8028 16 6 1.9920 -3.1929 -2.1140 17 6 1.0316 -4.3488 -2.4014 18 6 2.6893 -2.5940 -3.3371 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 3.0797 1.3444 -0.1083 23 1 1.5611 1.9274 -0.8309 24 1 1.9882 4.8553 2.8235 25 1 1.5611 -0.3872 -2.0629 26 1 3.0797 -0.6611 -1.1756 27 1 3.7958 -2.8422 -0.8113 28 1 2.6150 -4.0922 -0.1452 29 1 0.0497 -3.9502 -2.6567 30 1 1.4124 -4.9390 -3.2349 31 1 0.9485 -4.9806 -1.5171 32 1 3.6320 -2.1400 -3.0318 33 1 2.8844 -3.3808 -4.0657 34 1 2.0484 -1.8344 -3.7849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595914415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:59 Heat of formation + Delta-G solvation = -1.049955 kcal Electronic energy + Delta-G solvation = -12682.313854 eV Core-core repulsion = 10614.918929 eV Total energy + Delta-G solvation = -2067.394925 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.93147 -37.62741 -34.62112 -30.97874 -29.67422 -28.70407 -27.73988 -25.63313 -22.53530 -21.39588 -19.53127 -18.96950 -16.69707 -16.47471 -16.16135 -15.61447 -15.03696 -14.57402 -14.45454 -14.29406 -13.75215 -13.42834 -13.11666 -13.00156 -12.83940 -12.63419 -12.57325 -12.48372 -12.04601 -11.82006 -11.70787 -11.44135 -10.81478 -10.65827 -10.35615 -9.01962 -8.29671 -6.33317 1.32898 1.35018 1.46083 2.33259 2.77560 3.03104 3.29024 3.78814 3.95791 3.98013 4.24557 4.44490 4.46124 4.58371 4.64794 4.73639 4.81746 4.87265 4.92417 4.98458 5.00161 5.08868 5.09673 5.12043 5.18878 5.30834 5.37150 5.51699 5.53054 5.98954 6.35573 6.65825 6.72758 7.30387 8.87059 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.057185 B = 0.007704 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.521298 B = 3633.534225 C = 3870.417790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.549 5.549 3 C 0.171 3.829 4 C -0.519 4.519 5 H 0.038 0.962 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.250 1.250 12 C 0.090 3.910 13 C -0.151 4.151 14 H 0.101 0.899 15 C -0.168 4.168 16 C -0.120 4.120 17 C -0.111 4.111 18 C -0.116 4.116 19 H 0.017 0.983 20 H 0.079 0.921 21 H 0.046 0.954 22 H 0.028 0.972 23 H -0.014 1.014 24 H 0.267 0.733 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -13.771 -13.081 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.273 5.273 3 C 0.044 3.956 4 C -0.557 4.557 5 H 0.056 0.944 6 C -0.190 4.190 7 N -0.588 5.588 8 Si 0.771 3.229 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.174 1.174 12 C -0.038 4.038 13 C -0.169 4.169 14 H 0.119 0.881 15 C -0.205 4.205 16 C -0.121 4.121 17 C -0.168 4.168 18 C -0.173 4.173 19 H 0.035 0.965 20 H 0.098 0.902 21 H 0.065 0.935 22 H 0.046 0.954 23 H 0.003 0.997 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.352 -13.843 -12.556 18.738 hybrid contribution -0.019 1.302 -0.490 1.392 sum 1.333 -12.540 -13.047 18.145 Atomic orbital electron populations 1.22202 0.87584 1.01097 0.99717 1.61809 1.08314 1.14560 1.42603 1.19952 0.95135 0.85869 0.94615 1.21273 1.34967 0.97590 1.01856 0.94410 1.25859 0.96941 0.98380 0.97781 1.70048 1.48578 1.13893 1.26307 0.85705 0.79275 0.78710 0.79198 1.19200 1.20401 1.17411 1.21624 0.99048 0.92208 0.90903 1.22370 1.00290 0.90700 1.03560 0.88115 1.23321 0.96127 1.01337 0.99669 1.21783 1.01164 0.98895 0.90224 1.21356 0.97775 0.95476 1.02226 1.21360 0.99326 1.00770 0.95827 0.96475 0.90243 0.93466 0.95430 0.99679 0.92357 0.95130 0.91791 0.89275 0.88222 0.92232 0.90753 0.92214 0.92904 0.90528 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.19 127.69 1.17 2.85 16 2 N -0.55 -23.82 4.75 -927.01 -4.41 -28.22 16 3 C 0.17 8.56 3.79 85.56 0.32 8.88 16 4 C -0.52 -30.94 9.07 25.60 0.23 -30.70 16 5 H 0.04 2.51 7.35 -2.91 -0.02 2.49 16 6 C 0.01 0.46 5.47 84.65 0.46 0.92 16 7 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 8 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 12 C 0.09 3.09 4.32 86.31 0.37 3.46 16 13 C -0.15 -4.28 5.39 -10.79 -0.06 -4.33 16 14 H 0.10 2.95 6.35 -2.39 -0.02 2.94 16 15 C -0.17 -4.12 9.47 30.62 0.29 -3.83 16 16 C -0.12 -2.64 2.70 -52.16 -0.14 -2.78 16 17 C -0.11 -1.95 9.85 71.98 0.71 -1.24 16 18 C -0.12 -2.31 8.86 71.98 0.64 -1.67 16 19 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 20 H 0.08 2.63 6.22 -2.38 -0.01 2.62 16 21 H 0.05 2.14 6.86 -2.39 -0.02 2.12 16 22 H 0.03 1.37 6.99 -2.39 -0.02 1.35 16 23 H -0.01 -0.71 7.55 -2.39 -0.02 -0.72 16 24 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 25 H 0.03 1.02 7.75 -2.38 -0.02 1.00 16 26 H 0.06 2.20 7.66 -2.39 -0.02 2.19 16 27 H 0.09 2.23 7.94 -2.39 -0.02 2.21 16 28 H 0.10 2.22 8.05 -2.39 -0.02 2.20 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.06 7.93 -2.39 -0.02 1.04 16 31 H 0.06 1.00 7.90 -2.38 -0.02 0.98 16 32 H 0.05 1.10 7.90 -2.39 -0.02 1.08 16 33 H 0.08 1.21 7.92 -2.39 -0.02 1.20 16 34 H 0.05 1.15 7.84 -2.38 -0.02 1.13 16 Total: -1.00 -66.09 271.85 2.76 -63.32 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.98 Total: 6.59 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 4.00 Total: -28.46 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -4.11 Total: -88.11 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -66.09 2.76 -63.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595914415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.273 kcal (2) G-P(sol) polarization free energy of solvation -66.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds