Wall clock time and date at job start Sun Mar 29 2020 21:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47017 * 2 1 4 4 C 1.52994 * 109.47382 * 239.99384 * 2 1 3 5 5 C 1.52999 * 109.47246 * 174.99758 * 4 2 1 6 6 C 1.50699 * 109.47196 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00229 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99978 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99999 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99945 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47120 * 59.99984 * 10 8 6 12 12 H 1.48502 * 109.47005 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47357 * 300.00257 * 10 8 6 14 14 N 1.46905 * 109.46912 * 119.99726 * 2 1 3 15 15 C 1.46898 * 111.00154 * 274.99945 * 14 2 1 16 16 H 1.08999 * 115.55953 * 350.70699 * 15 14 2 17 17 C 1.53002 * 117.49965 * 136.38976 * 15 14 2 18 18 C 1.53000 * 60.02940 * 107.50426 * 17 15 14 19 19 H 1.08999 * 117.49942 * 252.47315 * 18 17 15 20 20 C 1.53003 * 117.49792 * 107.48056 * 18 17 15 21 21 H 1.09009 * 109.46670 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47017 * 300.00021 * 1 2 3 23 23 H 1.09001 * 109.46705 * 60.00702 * 1 2 3 24 24 H 1.08998 * 109.47711 * 295.00281 * 4 2 1 25 25 H 1.09003 * 109.46942 * 55.00236 * 4 2 1 26 26 H 1.08997 * 109.47590 * 300.00476 * 5 4 2 27 27 H 1.09003 * 109.46759 * 60.00366 * 5 4 2 28 28 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 29 29 H 1.00896 * 111.00255 * 38.95481 * 14 2 1 30 30 H 1.09002 * 117.49918 * 0.02562 * 17 15 14 31 31 H 1.09002 * 117.49754 * 215.00609 * 17 15 14 32 32 H 1.08998 * 109.47616 * 111.39176 * 20 18 17 33 33 H 1.08996 * 109.47220 * 231.39461 * 20 18 17 34 34 H 1.09006 * 109.46853 * 351.38997 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5442 7 1 3.3688 -1.8032 -3.2138 8 6 5.4186 -1.3602 -2.8155 9 7 6.2692 -0.7763 -2.0000 10 14 6.0412 -2.2397 -4.3414 11 1 5.4495 -1.6123 -5.5504 12 1 7.5213 -2.1360 -4.4032 13 1 5.6477 -3.6705 -4.2834 14 7 2.0197 -0.6925 1.1995 15 6 2.0825 0.2226 2.3469 16 1 1.9212 1.2760 2.1178 17 6 1.5681 -0.2945 3.6919 18 6 3.0706 -0.1138 3.4665 19 1 3.6742 -1.0141 3.3521 20 6 3.7563 1.0544 4.1781 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 1.7518 -1.7716 -1.2055 25 1 1.6055 -0.2619 -2.1369 26 1 3.8533 0.4369 -1.3573 27 1 3.9995 -1.0728 -0.4258 28 1 7.2199 -0.8026 -2.1907 29 1 1.4496 -1.4979 1.4102 30 1 1.1836 -1.3138 3.7255 31 1 1.0682 0.4187 4.3474 32 1 4.4273 0.6689 4.9457 33 1 4.3278 1.6356 3.4545 34 1 3.0021 1.6909 4.6409 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476060.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:44 Heat of formation + Delta-G solvation = -18.864144 kcal Electronic energy + Delta-G solvation = -12508.916014 eV Core-core repulsion = 10440.748607 eV Total energy + Delta-G solvation = -2068.167406 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.48036 -37.07562 -34.99438 -32.16056 -30.23620 -28.39565 -26.96266 -23.31549 -22.52139 -21.58437 -21.05674 -18.36084 -17.12536 -16.54147 -16.04699 -15.14095 -14.83115 -14.44299 -14.22697 -13.97783 -13.94014 -13.41251 -13.14967 -12.83157 -12.77600 -12.63066 -12.35186 -12.24210 -11.88056 -11.60338 -11.51791 -11.20185 -10.98409 -10.69006 -10.48316 -8.91588 -8.13407 -6.24610 1.39527 1.43425 1.51132 2.43867 2.91956 3.18042 3.19997 3.99863 4.01485 4.11305 4.21100 4.35614 4.44076 4.53707 4.72509 4.77618 4.91294 4.96133 4.97235 5.02364 5.05985 5.15405 5.25607 5.28615 5.45982 5.47907 5.58653 5.88899 6.02599 6.32272 6.34562 6.62015 6.95309 7.43518 8.97738 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037747 B = 0.007876 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.596251 B = 3554.327734 C = 4127.352597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 H 0.059 0.941 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.546 4.546 7 H 0.056 0.944 8 C -0.003 4.003 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.268 1.268 14 N -0.664 5.664 15 C 0.019 3.981 16 H 0.104 0.896 17 C -0.176 4.176 18 C -0.166 4.166 19 H 0.084 0.916 20 C -0.116 4.116 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.052 0.948 26 H -0.025 1.025 27 H 0.001 0.999 28 H 0.261 0.739 29 H 0.344 0.656 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.750 2.063 9.595 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.017 4.017 3 H 0.077 0.923 4 C -0.128 4.128 5 C 0.002 3.998 6 C -0.584 4.584 7 H 0.075 0.925 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.193 1.193 14 N -0.294 5.294 15 C -0.092 4.092 16 H 0.122 0.878 17 C -0.215 4.215 18 C -0.185 4.185 19 H 0.102 0.898 20 C -0.173 4.173 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.070 0.930 26 H -0.007 1.007 27 H 0.019 0.981 28 H 0.070 0.930 29 H 0.164 0.836 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.916 2.169 9.427 13.853 hybrid contribution -0.042 -0.319 -0.587 0.670 sum -9.958 1.849 8.839 13.443 Atomic orbital electron populations 1.22405 0.95055 1.02503 1.02536 1.21586 0.93545 0.96766 0.89833 0.92277 1.21475 0.96515 0.99129 0.95636 1.18807 0.92251 0.93754 0.94960 1.21804 0.92583 1.34560 1.09425 0.92537 1.25996 0.97390 0.96509 1.00120 1.70128 1.02558 1.45622 1.39054 0.85538 0.76998 0.79226 0.79477 1.19124 1.20850 1.19254 1.60092 1.57401 1.09085 1.02788 1.22570 1.04626 0.96149 0.85851 0.87802 1.23613 0.95695 1.02830 0.99370 1.22595 0.92657 1.00950 1.02338 0.89802 1.21306 1.00411 0.96149 0.99428 0.91961 0.91775 0.91632 0.93376 0.92965 1.00662 0.98079 0.93030 0.83613 0.88398 0.87036 0.91533 0.93550 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 9.16 71.98 0.66 -3.56 16 2 C 0.09 3.17 2.55 44.91 0.11 3.28 16 3 H 0.06 2.17 7.57 -2.39 -0.02 2.15 16 4 C -0.09 -3.83 4.83 30.59 0.15 -3.68 16 5 C 0.04 2.21 4.86 29.85 0.15 2.35 16 6 C -0.55 -32.67 9.11 25.60 0.23 -32.44 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 8 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 9 N -0.93 -59.52 13.29 21.45 0.28 -59.23 16 10 Si 0.96 45.96 29.54 68.60 2.03 47.99 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 N -0.66 -22.41 5.98 -469.35 -2.81 -25.22 16 15 C 0.02 0.54 5.82 44.94 0.26 0.80 16 16 H 0.10 2.94 7.60 -2.39 -0.02 2.92 16 17 C -0.18 -3.90 9.87 30.60 0.30 -3.59 16 18 C -0.17 -4.61 6.34 -10.77 -0.07 -4.68 16 19 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 20 C -0.12 -2.74 10.19 71.98 0.73 -2.01 16 21 H 0.06 1.48 8.13 -2.38 -0.02 1.46 16 22 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 27 H 0.00 0.05 7.75 -2.39 -0.02 0.03 16 28 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.34 10.30 8.26 -89.70 -0.74 9.56 16 30 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 31 H 0.11 1.98 8.05 -2.39 -0.02 1.96 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.37 7.90 -2.38 -0.02 1.35 16 Total: -1.00 -67.58 282.77 2.79 -64.79 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.30 Total: 14.92 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 2.99 Total: -43.24 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -2.52 Total: -84.45 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -67.58 2.79 -64.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476060.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.921 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds