Wall clock time and date at job start Sun Mar 29 2020 21:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47214 * 2 1 4 4 C 1.52999 * 109.47225 * 119.99759 * 2 1 3 5 5 C 1.53005 * 109.47038 * 185.00062 * 4 2 1 6 6 C 1.50697 * 109.47302 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99826 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00514 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99477 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00324 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47081 * 90.00052 * 10 8 6 12 12 H 1.48500 * 109.47079 * 210.00076 * 10 8 6 13 13 H 1.48498 * 109.47335 * 329.99910 * 10 8 6 14 14 N 1.46897 * 109.47179 * 240.00071 * 2 1 3 15 15 C 1.46900 * 110.99916 * 101.17876 * 14 2 1 16 16 C 1.53002 * 115.54762 * 279.49031 * 15 14 2 17 17 C 1.53001 * 117.49812 * 133.78994 * 15 14 2 18 18 C 1.52997 * 117.50374 * 65.16480 * 15 14 2 19 19 H 1.08994 * 109.47202 * 59.99845 * 1 2 3 20 20 H 1.09001 * 109.46920 * 299.99931 * 1 2 3 21 21 H 1.09004 * 109.46707 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47705 * 304.99856 * 4 2 1 23 23 H 1.08995 * 109.47028 * 65.00317 * 4 2 1 24 24 H 1.09000 * 109.47214 * 300.00453 * 5 4 2 25 25 H 1.08995 * 109.47002 * 60.00239 * 5 4 2 26 26 H 0.96995 * 119.99936 * 179.97438 * 9 8 6 27 27 H 1.00897 * 110.99981 * 225.13340 * 14 2 1 28 28 H 1.09008 * 109.46644 * 65.46648 * 16 15 14 29 29 H 1.09003 * 109.47187 * 185.45954 * 16 15 14 30 30 H 1.08995 * 109.47691 * 305.46350 * 16 15 14 31 31 H 1.08998 * 117.49752 * 359.97438 * 17 15 14 32 32 H 1.09002 * 117.49725 * 145.02205 * 17 15 14 33 33 H 1.08994 * 117.50207 * 214.98235 * 18 15 14 34 34 H 1.09002 * 117.49361 * 359.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 6 4.0674 -1.3240 2.5438 7 1 3.3690 -1.8052 3.2125 8 6 5.4187 -1.3612 2.8150 9 7 6.2692 -0.7766 1.9998 10 14 6.0414 -2.2417 4.3402 11 1 6.3208 -3.6628 4.0119 12 1 7.2881 -1.5889 4.8143 13 1 5.0104 -2.1735 5.4068 14 7 2.0197 -0.6925 -1.1994 15 6 2.4458 0.2689 -2.2252 16 6 1.3220 0.8788 -3.0654 17 6 3.7877 0.0167 -2.9157 18 6 3.6498 1.1568 -1.9047 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.6055 -0.2617 2.1370 23 1 1.7517 -1.7714 1.2056 24 1 3.9995 -1.0726 0.4259 25 1 3.8532 0.4371 1.3573 26 1 7.2198 -0.8024 2.1908 27 1 2.7667 -1.3303 -0.9690 28 1 0.6841 1.4920 -2.4287 29 1 1.7520 1.4979 -3.8528 30 1 0.7293 0.0812 -3.5133 31 1 4.3544 -0.8622 -2.6085 32 1 3.8700 0.2854 -3.9689 33 1 3.6415 2.1754 -2.2926 34 1 4.1255 1.0279 -0.9324 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:17 Heat of formation + Delta-G solvation = -0.248610 kcal Electronic energy + Delta-G solvation = -12902.412081 eV Core-core repulsion = 10835.051905 eV Total energy + Delta-G solvation = -2067.360176 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.60738 -35.22744 -32.84955 -29.91376 -28.58359 -28.16223 -24.98517 -22.23689 -21.47561 -19.71298 -18.93548 -16.36800 -15.68748 -14.94302 -14.50405 -14.12735 -13.43998 -12.83507 -12.56785 -12.50572 -12.16634 -11.88077 -11.70506 -11.35432 -11.24008 -11.03881 -10.93850 -10.54825 -10.31826 -10.16264 -9.74590 -9.43055 -9.25051 -9.04075 -8.36875 -7.87294 -6.01996 -4.04210 3.30880 3.37195 3.40714 4.05530 4.44718 4.60962 5.08040 5.22432 5.27183 5.33880 5.59741 5.79249 5.86075 5.94558 5.97089 6.00286 6.10232 6.25859 6.28810 6.35369 6.47979 6.54706 6.57704 6.65809 6.91765 7.08719 7.58886 7.61357 7.79742 7.93192 7.99118 8.41037 9.02354 9.60120 11.09006 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.044221 B = 0.008957 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.025670 B = 3125.458633 C = 3607.744626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.050 0.950 4 C -0.123 4.123 5 C 0.023 3.977 6 C -0.521 4.521 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.652 5.652 15 C 0.051 3.949 16 C -0.099 4.099 17 C -0.178 4.178 18 C -0.212 4.212 19 H 0.046 0.954 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.013 0.987 25 H 0.013 0.987 26 H 0.260 0.740 27 H 0.352 0.648 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 2.828 -7.681 11.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 H 0.068 0.932 4 C -0.161 4.161 5 C -0.014 4.014 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.284 5.284 15 C -0.041 4.041 16 C -0.156 4.156 17 C -0.216 4.216 18 C -0.251 4.251 19 H 0.065 0.935 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.174 0.826 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.960 2.757 -7.952 11.584 hybrid contribution 1.472 -0.148 1.234 1.926 sum -6.488 2.608 -6.719 9.697 Atomic orbital electron populations 1.21824 0.95874 1.01464 1.00134 1.21633 0.94452 0.96977 0.89600 0.93204 1.21986 0.99795 0.99332 0.95002 1.19123 0.88695 0.96830 0.96798 1.21250 0.91960 1.34249 1.08427 0.92698 1.25024 0.97085 0.95602 0.96713 1.69958 1.02345 1.44045 1.37046 0.86601 0.78304 0.79763 0.83392 1.20660 1.21252 1.19892 1.60387 1.40838 1.17149 1.10048 1.21706 0.88213 0.97047 0.97179 1.21165 0.96888 0.99712 0.97870 1.23207 0.99590 1.00980 0.97825 1.23633 1.04418 0.95591 1.01475 0.93454 0.93307 0.92715 0.92669 0.92685 0.96877 0.96899 0.93043 0.82607 0.92455 0.92790 0.91860 0.88663 0.89008 0.89451 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.52 37.16 0.35 -1.70 16 2 C 0.08 1.47 2.58 -67.72 -0.17 1.30 16 3 H 0.05 0.94 7.05 -51.93 -0.37 0.57 16 4 C -0.12 -2.56 4.61 -26.73 -0.12 -2.69 16 5 C 0.02 0.57 4.55 -27.88 -0.13 0.45 16 6 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 7 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 N -0.65 -11.37 6.52 -93.05 -0.61 -11.98 16 15 C 0.05 0.80 2.28 -131.60 -0.30 0.50 16 16 C -0.10 -1.28 9.69 37.16 0.36 -0.92 16 17 C -0.18 -2.71 9.91 -26.73 -0.26 -2.98 16 18 C -0.21 -3.50 9.30 -26.73 -0.25 -3.74 16 19 H 0.05 0.66 6.85 -51.93 -0.36 0.31 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.01 0.35 6.63 -51.93 -0.34 0.00 16 25 H 0.01 0.35 8.07 -51.93 -0.42 -0.07 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.35 6.78 6.32 -39.29 -0.25 6.54 16 28 H 0.06 0.73 7.11 -51.92 -0.37 0.36 16 29 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.11 2.11 7.79 -51.93 -0.40 1.70 16 LS Contribution 276.71 15.07 4.17 4.17 Total: -1.00 -28.94 276.71 -7.50 -36.45 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.85 Total: 3.93 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -0.94 Total: -23.32 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.13 Total: -37.97 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.94 -7.50 -36.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.198 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds