Wall clock time and date at job start Sun Mar 29 2020 21:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46977 * 2 1 4 4 C 1.52999 * 109.46756 * 119.99875 * 2 1 3 5 5 C 1.53005 * 109.46655 * 184.99774 * 4 2 1 6 6 C 1.50704 * 109.47048 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99727 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00367 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00303 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99550 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47532 * 90.00140 * 10 8 6 12 12 H 1.48505 * 109.46930 * 210.00140 * 10 8 6 13 13 H 1.48500 * 109.47456 * 329.99647 * 10 8 6 14 14 N 1.46898 * 109.46915 * 239.99770 * 2 1 3 15 15 C 1.48530 * 111.00125 * 311.02511 * 14 2 1 16 16 C 1.54943 * 103.22614 * 159.72239 * 15 14 2 17 17 C 1.54591 * 102.92212 * 322.58647 * 16 15 14 18 18 C 1.47905 * 111.00284 * 68.42136 * 14 2 1 19 19 H 1.09001 * 109.47743 * 187.75438 * 1 2 3 20 20 H 1.08999 * 109.47210 * 307.75684 * 1 2 3 21 21 H 1.09007 * 109.47190 * 67.75701 * 1 2 3 22 22 H 1.09001 * 109.47231 * 304.99552 * 4 2 1 23 23 H 1.08997 * 109.47127 * 65.00159 * 4 2 1 24 24 H 1.08998 * 109.47461 * 300.00243 * 5 4 2 25 25 H 1.09007 * 109.47148 * 60.00360 * 5 4 2 26 26 H 0.97003 * 119.99720 * 179.97438 * 9 8 6 27 27 H 1.09003 * 110.66921 * 278.15432 * 15 14 2 28 28 H 1.08998 * 110.67042 * 41.28455 * 15 14 2 29 29 H 1.09005 * 110.71918 * 204.22283 * 16 15 14 30 30 H 1.09002 * 110.87451 * 81.01928 * 16 15 14 31 31 H 1.09000 * 110.30529 * 263.04497 * 17 16 15 32 32 H 1.08996 * 110.31193 * 140.87585 * 17 16 15 33 33 H 1.08996 * 109.91236 * 333.50908 * 18 14 2 34 34 H 1.09003 * 109.91273 * 94.80014 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8046 3.2130 8 6 5.4184 -1.3605 2.8156 9 7 5.8567 -1.9805 3.8894 10 14 6.6263 -0.5278 1.6593 11 1 6.8307 0.8796 2.0866 12 1 7.9237 -1.2495 1.6953 13 1 6.0848 -0.5517 0.2767 14 7 2.0196 -0.6925 -1.1994 15 6 1.3389 -2.0011 -1.3737 16 6 1.5586 -2.3180 -2.8743 17 6 1.4311 -0.9300 -3.5430 18 6 1.7175 0.0849 -2.4209 19 1 -0.3634 -1.0182 0.1387 20 1 -0.3633 0.6292 0.8125 21 1 -0.3634 0.3890 -0.9512 22 1 1.6053 -0.2616 2.1370 23 1 1.7515 -1.7715 1.2056 24 1 3.9994 -1.0728 0.4260 25 1 3.8532 0.4370 1.3573 26 1 6.8074 -2.0063 4.0804 27 1 1.8035 -2.7629 -0.7476 28 1 0.2755 -1.9144 -1.1505 29 1 0.7883 -2.9958 -3.2422 30 1 2.5509 -2.7371 -3.0416 31 1 0.4228 -0.7889 -3.9324 32 1 2.1643 -0.8266 -4.3429 33 1 0.8415 0.7118 -2.2547 34 1 2.5744 0.7029 -2.6890 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:12 Heat of formation + Delta-G solvation = -29.932865 kcal Electronic energy + Delta-G solvation = -13009.490373 eV Core-core repulsion = 10940.842990 eV Total energy + Delta-G solvation = -2068.647382 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.35664 -36.26577 -34.63160 -32.10358 -29.84531 -29.49655 -27.19789 -23.75340 -22.47525 -21.61039 -20.31856 -18.81408 -17.17103 -16.75602 -16.33052 -15.37771 -14.97158 -14.68928 -14.54471 -14.37301 -13.72622 -13.35192 -13.01354 -12.92418 -12.60279 -12.32810 -12.15618 -12.05835 -11.89893 -11.67073 -11.43906 -11.36904 -11.26532 -11.06913 -10.73387 -9.09568 -8.27742 -6.30036 1.35102 1.37864 1.53055 2.38735 3.08336 3.17641 3.79396 3.83246 4.09247 4.12244 4.27786 4.42159 4.44190 4.66354 4.68094 4.72075 4.87098 4.91992 4.97452 5.02412 5.06682 5.13151 5.20854 5.23262 5.39203 5.40671 5.56240 5.68419 5.75148 6.16514 6.29449 6.33134 6.78217 7.34564 8.89341 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041576 B = 0.009487 C = 0.008743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.306325 B = 2950.729159 C = 3201.893809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.074 3.926 3 H 0.074 0.926 4 C -0.084 4.084 5 C 0.003 3.997 6 C -0.531 4.531 7 H 0.028 0.972 8 C 0.003 3.997 9 N -0.955 5.955 10 Si 0.952 3.048 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.250 1.250 14 N -0.532 5.532 15 C 0.025 3.975 16 C -0.121 4.121 17 C -0.122 4.122 18 C 0.028 3.972 19 H 0.059 0.941 20 H 0.066 0.934 21 H 0.069 0.931 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.023 0.977 25 H 0.006 0.994 26 H 0.265 0.735 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 4.080 -15.908 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.035 4.035 3 H 0.092 0.908 4 C -0.122 4.122 5 C -0.035 4.035 6 C -0.569 4.569 7 H 0.047 0.953 8 C -0.193 4.193 9 N -0.596 5.596 10 Si 0.775 3.225 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.173 1.173 14 N -0.257 5.257 15 C -0.103 4.103 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.100 4.100 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.088 0.912 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.042 0.958 25 H 0.025 0.975 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.130 3.985 -15.744 19.141 hybrid contribution 0.040 0.161 0.329 0.369 sum -10.090 4.147 -15.415 18.885 Atomic orbital electron populations 1.22374 0.95863 1.02418 1.02680 1.21823 0.93636 0.97668 0.90330 0.90767 1.21341 0.96098 0.99053 0.95740 1.19349 0.94406 0.95027 0.94695 1.21633 0.92636 1.34041 1.08582 0.95335 1.26005 1.00667 0.95826 0.96851 1.70078 1.15173 1.45752 1.28581 0.85629 0.77574 0.78706 0.80572 1.19213 1.20934 1.17331 1.64864 1.54959 1.03723 1.02104 1.23340 0.97759 0.91720 0.97457 1.22470 1.02246 0.97599 0.93571 1.22362 1.02646 0.93694 0.97317 1.22952 1.00263 0.96771 0.89975 0.92176 0.91511 0.91201 0.93148 0.93827 0.95819 0.97522 0.92622 0.92426 0.91908 0.89347 0.92006 0.89885 0.90531 0.92557 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 8.17 71.98 0.59 -3.76 16 2 C 0.07 2.38 2.27 44.91 0.10 2.49 16 3 H 0.07 2.40 8.10 -2.39 -0.02 2.38 16 4 C -0.08 -3.48 4.63 30.60 0.14 -3.34 16 5 C 0.00 0.13 3.93 29.85 0.12 0.25 16 6 C -0.53 -32.41 9.66 25.60 0.25 -32.16 16 7 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 8 C 0.00 0.16 5.47 84.66 0.46 0.62 16 9 N -0.95 -62.32 13.96 21.45 0.30 -62.02 16 10 Si 0.95 47.12 27.47 68.60 1.88 49.00 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 13 H -0.25 -11.84 6.54 99.48 0.65 -11.19 16 14 N -0.53 -16.73 4.69 -857.87 -4.03 -20.75 16 15 C 0.02 0.69 5.57 86.65 0.48 1.17 16 16 C -0.12 -2.67 7.06 31.80 0.22 -2.45 16 17 C -0.12 -2.37 6.93 31.47 0.22 -2.15 16 18 C 0.03 0.68 6.43 86.44 0.56 1.23 16 19 H 0.06 1.49 6.41 -2.39 -0.02 1.48 16 20 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.07 1.47 6.28 -2.38 -0.01 1.45 16 22 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.04 1.84 7.10 -2.39 -0.02 1.83 16 24 H 0.02 1.22 6.81 -2.39 -0.02 1.20 16 25 H 0.01 0.32 7.57 -2.38 -0.02 0.30 16 26 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 27 H 0.06 1.90 7.65 -2.39 -0.02 1.88 16 28 H 0.06 1.57 5.46 -2.39 -0.01 1.55 16 29 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.20 6.02 -2.39 -0.01 1.19 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.83 261.69 2.29 -66.55 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 0.99 Total: 5.31 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 3.14 Total: -38.09 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -3.73 Total: -82.77 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.88 Total: 49.00 kcal Total: -68.83 2.29 -66.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.615 kcal (2) G-P(sol) polarization free energy of solvation -68.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds