Wall clock time and date at job start Sun Mar 29 2020 21:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47302 * 2 1 4 4 C 1.53000 * 109.47336 * 239.99526 * 2 1 3 5 5 C 1.53005 * 109.46608 * 65.37105 * 4 2 1 6 6 C 1.50700 * 109.46706 * 183.08788 * 5 4 2 7 7 H 1.07999 * 119.99995 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99838 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00409 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47027 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47481 * 119.99618 * 10 8 6 13 13 H 1.48496 * 109.47270 * 240.00341 * 10 8 6 14 14 N 1.46903 * 109.47040 * 119.99339 * 2 1 3 15 15 C 1.48533 * 111.00181 * 179.06237 * 14 2 1 16 16 C 1.54933 * 103.22800 * 159.72670 * 15 14 2 17 17 C 1.54599 * 102.91945 * 322.58892 * 16 15 14 18 18 C 1.47899 * 111.00363 * 296.46461 * 14 2 1 19 19 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47211 * 300.00595 * 1 2 3 21 21 H 1.09003 * 109.46954 * 59.99977 * 1 2 3 22 22 H 1.09000 * 109.46835 * 185.37057 * 4 2 1 23 23 H 1.09000 * 109.47051 * 305.37117 * 4 2 1 24 24 H 1.08996 * 109.46812 * 303.08916 * 5 4 2 25 25 H 1.08993 * 109.47058 * 63.09179 * 5 4 2 26 26 H 0.96997 * 120.00329 * 180.02562 * 9 8 6 27 27 H 1.08997 * 110.66810 * 278.16337 * 15 14 2 28 28 H 1.09005 * 110.66155 * 41.29125 * 15 14 2 29 29 H 1.08997 * 110.72419 * 204.23170 * 16 15 14 30 30 H 1.08999 * 110.72712 * 80.94389 * 16 15 14 31 31 H 1.09010 * 110.30753 * 263.04030 * 17 16 15 32 32 H 1.08997 * 110.30838 * 140.87825 * 17 16 15 33 33 H 1.08998 * 109.91436 * 333.50545 * 18 14 2 34 34 H 1.08995 * 109.91623 * 94.79943 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6432 0.0737 -2.4948 6 6 2.0791 -0.6746 -3.7281 7 1 2.5878 -1.6226 -3.6330 8 6 1.8275 -0.1496 -4.9779 9 7 1.2076 1.0045 -5.0938 10 14 2.3671 -1.0774 -6.5068 11 1 3.0381 -2.3408 -6.1081 12 1 1.1791 -1.3905 -7.3410 13 1 3.3126 -0.2390 -7.2867 14 7 2.0197 -0.6924 1.1995 15 6 3.5043 -0.7319 1.2226 16 6 3.8290 -0.9872 2.7159 17 6 2.7531 -0.1549 3.4507 18 6 1.6162 0.0258 2.4279 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 3.1258 -0.8053 -1.2023 23 1 1.6003 -1.7175 -1.2985 24 1 0.5614 0.2048 -2.5127 25 1 2.1273 1.0499 -2.4722 26 1 1.0302 1.3737 -5.9730 27 1 3.8771 -1.5474 0.6030 28 1 3.9196 0.2216 0.8961 29 1 4.8284 -0.6275 2.9603 30 1 3.7291 -2.0455 2.9570 31 1 3.1581 0.8146 3.7414 32 1 2.3918 -0.6929 4.3271 33 1 1.4773 1.0847 2.2102 34 1 0.6927 -0.3997 2.8204 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492110.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:14 Heat of formation + Delta-G solvation = -38.214420 kcal Electronic energy + Delta-G solvation = -12758.716317 eV Core-core repulsion = 10689.709820 eV Total energy + Delta-G solvation = -2069.006497 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.15894 -36.54361 -34.66942 -31.80225 -30.15012 -29.17576 -26.96159 -24.11152 -22.49133 -21.35711 -20.75090 -18.57248 -17.05568 -16.68876 -16.40060 -15.83154 -14.98066 -14.51471 -14.31740 -14.08358 -13.75290 -13.26857 -13.12990 -12.89714 -12.66018 -12.33292 -12.32073 -12.17615 -11.92961 -11.82608 -11.46721 -11.39531 -11.25131 -11.00466 -10.54345 -9.33960 -8.20823 -6.31648 1.39043 1.39428 1.53078 2.40342 3.06169 3.12221 3.77564 3.80340 4.02637 4.19349 4.23615 4.38878 4.47119 4.63885 4.72907 4.80088 4.91219 4.94838 4.99623 5.01361 5.06533 5.09038 5.17927 5.18877 5.35238 5.38869 5.51419 5.76163 5.85299 6.05650 6.13293 6.28700 6.85176 7.37389 8.91333 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.063839 B = 0.007123 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.497895 B = 3929.868164 C = 4205.625597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.080 3.920 3 H 0.024 0.976 4 C -0.087 4.087 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.000 4.000 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.277 1.277 14 N -0.523 5.523 15 C 0.027 3.973 16 C -0.116 4.116 17 C -0.125 4.125 18 C 0.030 3.970 19 H 0.059 0.941 20 H 0.066 0.934 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.003 0.997 25 H -0.015 1.015 26 H 0.264 0.736 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -2.551 15.107 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 H 0.041 0.959 4 C -0.125 4.125 5 C -0.010 4.010 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.202 1.202 14 N -0.248 5.248 15 C -0.100 4.100 16 C -0.154 4.154 17 C -0.163 4.163 18 C -0.098 4.098 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.021 0.979 25 H 0.003 0.997 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.534 -2.952 14.977 15.474 hybrid contribution 0.380 0.791 -1.246 1.524 sum 2.914 -2.161 13.731 14.202 Atomic orbital electron populations 1.21754 0.93889 1.02154 1.01298 1.21739 0.96324 0.94421 0.90319 0.95855 1.21459 0.99215 0.98695 0.93095 1.19024 0.95408 0.94127 0.92476 1.21719 1.37588 1.06330 0.92413 0.92518 1.25976 0.95145 0.95908 1.02757 1.70101 1.42929 1.19807 1.24572 0.85397 0.78184 0.78809 0.78654 1.18717 1.20188 1.20248 1.64805 1.09458 1.48930 1.01596 1.23275 0.88102 1.00060 0.98604 1.22473 0.99287 1.01143 0.92478 1.22408 0.94957 1.00834 0.98102 1.22950 0.99902 0.96451 0.90474 0.92220 0.91506 0.93408 0.93529 0.93152 0.97916 0.99703 0.92743 0.90870 0.94839 0.89602 0.90410 0.90735 0.89467 0.94459 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 8.92 71.98 0.64 -3.99 16 2 C 0.08 2.99 1.83 44.91 0.08 3.07 16 3 H 0.02 0.92 7.98 -2.39 -0.02 0.90 16 4 C -0.09 -3.84 4.58 30.60 0.14 -3.70 16 5 C 0.03 1.48 4.80 29.85 0.14 1.63 16 6 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 10 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 14 N -0.52 -16.34 5.11 -857.88 -4.38 -20.72 16 15 C 0.03 0.78 5.37 86.65 0.47 1.24 16 16 C -0.12 -2.38 7.06 31.80 0.22 -2.16 16 17 C -0.13 -2.39 6.93 31.47 0.22 -2.17 16 18 C 0.03 0.74 5.49 86.45 0.47 1.22 16 19 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 20 H 0.07 1.94 7.27 -2.38 -0.02 1.92 16 21 H 0.05 1.85 6.51 -2.39 -0.02 1.84 16 22 H 0.05 2.02 6.64 -2.39 -0.02 2.01 16 23 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 24 H 0.00 0.15 6.44 -2.39 -0.02 0.13 16 25 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.07 2.19 7.53 -2.39 -0.02 2.17 16 28 H 0.03 1.01 8.01 -2.38 -0.02 0.99 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.04 0.96 7.64 -2.39 -0.02 0.94 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -64.73 268.01 2.05 -62.69 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 1.03 Total: 4.57 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 3.09 Total: -36.15 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -4.10 Total: -78.33 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.73 2.05 -62.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492110.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.471 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds