Wall clock time and date at job start Sun Mar 29 2020 21:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46821 * 2 1 4 4 C 1.52998 * 109.47325 * 240.00170 * 2 1 3 5 5 C 1.52995 * 109.47357 * 174.72169 * 4 2 1 6 6 C 1.50700 * 109.47142 * 175.54683 * 5 4 2 7 7 H 1.07996 * 120.00204 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00132 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00045 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00355 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47501 * 90.00184 * 10 8 6 12 12 H 1.48504 * 109.47165 * 210.00397 * 10 8 6 13 13 H 1.48503 * 109.46852 * 330.00077 * 10 8 6 14 14 N 1.46898 * 109.47635 * 119.99989 * 2 1 3 15 15 C 1.46902 * 111.00014 * 289.86712 * 14 2 1 16 16 C 1.46906 * 110.99682 * 53.81432 * 14 2 1 17 17 C 1.52997 * 117.49914 * 243.62543 * 16 14 2 18 18 C 1.52996 * 117.49804 * 175.00222 * 16 14 2 19 19 H 1.09001 * 109.46853 * 299.99660 * 1 2 3 20 20 H 1.08995 * 109.47507 * 60.00213 * 1 2 3 21 21 H 1.09007 * 109.46821 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47161 * 294.72973 * 4 2 1 23 23 H 1.09007 * 109.47214 * 54.72441 * 4 2 1 24 24 H 1.08998 * 109.47635 * 295.54772 * 5 4 2 25 25 H 1.09003 * 109.47023 * 55.54822 * 5 4 2 26 26 H 0.96999 * 120.00339 * 179.97438 * 9 8 6 27 27 H 1.08994 * 109.47034 * 180.66503 * 15 14 2 28 28 H 1.08996 * 109.47337 * 60.65390 * 15 14 2 29 29 H 1.09003 * 109.46518 * 300.65556 * 15 14 2 30 30 H 1.09001 * 115.54925 * 29.33146 * 16 14 2 31 31 H 1.08999 * 117.50125 * 359.97438 * 17 16 14 32 32 H 1.08995 * 117.50362 * 145.02098 * 17 16 14 33 33 H 1.09000 * 117.50069 * 214.97799 * 18 16 14 34 34 H 1.09005 * 117.50212 * 0.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5642 -0.6073 -1.3173 6 6 4.0761 -1.4089 -2.4863 7 1 3.3836 -1.9455 -3.1178 8 6 5.4285 -1.4563 -2.7503 9 7 6.2720 -0.8024 -1.9817 10 14 6.0631 -2.4492 -4.1997 11 1 6.1099 -1.5872 -5.4079 12 1 7.4274 -2.9511 -3.8966 13 1 5.1563 -3.5990 -4.4469 14 7 2.0198 -0.6925 1.1994 15 6 1.7559 0.0987 2.4087 16 6 1.4319 -2.0342 1.3095 17 6 0.5319 -2.3145 2.5146 18 6 1.9296 -2.9327 2.4434 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0278 0.0005 22 1 1.7558 -1.7725 -1.2033 23 1 1.6016 -0.2648 -2.1368 24 1 3.8453 0.4383 -1.4429 25 1 3.9989 -0.9921 -0.3948 26 1 7.2234 -0.8361 -2.1671 27 1 2.1390 -0.4315 3.2805 28 1 0.6818 0.2487 2.5176 29 1 2.2513 1.0661 2.3252 30 1 1.1724 -2.5128 0.3651 31 1 0.3763 -1.5034 3.2260 32 1 -0.3200 -2.9774 2.3633 33 1 1.9973 -4.0024 2.2453 34 1 2.6930 -2.5281 3.1081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:24 Heat of formation + Delta-G solvation = 20.350105 kcal Electronic energy + Delta-G solvation = -12955.028744 eV Core-core repulsion = 10888.561795 eV Total energy + Delta-G solvation = -2066.466949 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.04283 -35.10007 -32.95654 -30.98795 -28.86389 -25.98213 -24.67593 -22.12722 -21.86190 -20.70323 -18.47488 -16.32670 -15.96962 -15.54255 -14.40345 -14.10098 -13.53696 -13.12290 -12.50208 -12.29662 -12.14410 -11.93500 -11.69154 -11.31030 -11.14688 -11.02796 -10.81010 -10.50247 -10.32146 -10.09485 -9.98104 -9.56123 -9.14709 -8.85437 -8.19893 -7.60047 -5.85648 -3.86787 3.38733 3.44758 3.48124 4.02667 4.36787 4.56249 5.11881 5.19071 5.30566 5.41765 5.49686 5.52218 5.60171 5.72960 5.79226 5.81784 6.03284 6.10157 6.19707 6.27260 6.31685 6.36360 6.42018 6.69545 6.92199 7.31647 7.52871 7.62398 7.87511 8.10412 8.26302 8.60018 9.22125 9.75528 11.25441 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.044223 B = 0.008543 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.001794 B = 3276.718623 C = 3432.056279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.078 0.922 4 C -0.102 4.102 5 C 0.028 3.972 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.491 5.491 15 C 0.021 3.979 16 C 0.038 3.962 17 C -0.228 4.228 18 C -0.174 4.174 19 H 0.046 0.954 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.008 0.992 25 H 0.034 0.966 26 H 0.258 0.742 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 -0.285 7.669 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.096 0.904 4 C -0.140 4.140 5 C -0.010 4.010 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.212 5.212 15 C -0.128 4.128 16 C -0.072 4.072 17 C -0.268 4.268 18 C -0.212 4.212 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.026 0.974 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.101 -0.275 7.632 12.663 hybrid contribution -0.403 -0.461 -0.669 0.907 sum -10.504 -0.736 6.963 12.623 Atomic orbital electron populations 1.22493 0.98475 1.01756 1.01136 1.21900 0.91322 0.98391 0.91109 0.90405 1.21727 1.00806 0.98320 0.93105 1.19020 0.88136 0.96461 0.97335 1.21329 0.91873 1.29849 1.12527 0.93148 1.24998 0.97172 0.95850 0.96421 1.69982 1.02352 1.42706 1.38362 0.86686 0.78165 0.80515 0.83140 1.20858 1.21337 1.20036 1.61965 1.56132 1.00828 1.02240 1.22469 0.98617 0.98331 0.93342 1.22592 0.98984 0.92068 0.93542 1.23547 0.94471 1.04326 1.04411 1.23000 0.96342 0.98892 1.02924 0.93525 0.92451 0.92592 0.93319 0.93371 0.97365 0.94787 0.93259 0.91846 0.95562 0.91537 0.86208 0.88765 0.89522 0.88860 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 8.66 37.16 0.32 -2.25 16 2 C 0.08 1.41 2.30 -67.72 -0.16 1.26 16 3 H 0.08 1.40 8.05 -51.92 -0.42 0.98 16 4 C -0.10 -2.15 4.57 -26.73 -0.12 -2.27 16 5 C 0.03 0.74 4.91 -27.89 -0.14 0.60 16 6 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 10 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 14 N -0.49 -8.50 4.31 -226.91 -0.98 -9.48 16 15 C 0.02 0.29 7.99 60.07 0.48 0.77 16 16 C 0.04 0.60 4.30 -67.71 -0.29 0.31 16 17 C -0.23 -2.93 9.50 -26.73 -0.25 -3.18 16 18 C -0.17 -2.48 9.99 -26.73 -0.27 -2.75 16 19 H 0.05 0.61 6.71 -51.93 -0.35 0.26 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.06 0.79 6.82 -51.92 -0.35 0.43 16 22 H 0.05 1.02 6.28 -51.93 -0.33 0.69 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.03 0.98 7.64 -51.93 -0.40 0.58 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 27 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 28 H 0.03 0.34 5.71 -51.93 -0.30 0.04 16 29 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 30 H 0.12 2.00 5.99 -51.93 -0.31 1.69 16 31 H 0.09 1.15 5.89 -51.93 -0.31 0.84 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.36 7.57 -51.93 -0.39 0.97 16 LS Contribution 267.46 15.07 4.03 4.03 Total: -1.00 -30.76 267.46 -7.64 -38.41 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.57 Total: -1.82 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -0.84 Total: -21.38 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.24 Total: -36.47 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.76 -7.64 -38.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.756 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds