Wall clock time and date at job start Sun Mar 29 2020 22:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34668 * 123.63767 * 2 1 4 4 O 1.36003 * 125.06914 * 359.97438 * 3 2 1 5 5 C 1.34770 * 116.99657 * 245.77420 * 4 3 2 6 6 H 1.07997 * 120.00157 * 4.77341 * 5 4 3 7 7 C 1.38617 * 119.99527 * 184.76896 * 5 4 3 8 8 N 1.31596 * 120.00204 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99642 * 180.27924 * 7 5 4 10 10 H 1.48495 * 109.46923 * 269.72523 * 9 7 5 11 11 H 1.48500 * 109.47266 * 29.72443 * 9 7 5 12 12 H 1.48498 * 109.46904 * 149.72571 * 9 7 5 13 13 C 1.41388 * 109.85328 * 179.73555 * 3 2 1 14 14 O 1.21469 * 127.54408 * 180.28760 * 13 3 2 15 15 C 1.51586 * 104.90656 * 0.26575 * 13 3 2 16 16 H 1.08997 * 110.47828 * 118.69700 * 15 13 3 17 17 C 1.53004 * 110.47622 * 241.17683 * 15 13 3 18 18 O 1.34242 * 123.63248 * 180.22099 * 2 1 3 19 19 H 1.09002 * 109.47424 * 57.35087 * 1 2 3 20 20 H 1.08999 * 109.47519 * 177.35427 * 1 2 3 21 21 H 1.09002 * 109.47213 * 297.35436 * 1 2 3 22 22 H 0.97002 * 119.99740 * 180.02562 * 8 7 5 23 23 H 1.09002 * 109.47170 * 59.99765 * 17 15 13 24 24 H 1.08996 * 109.47539 * 180.02562 * 17 15 13 25 25 H 1.09006 * 109.47004 * 300.00387 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2529 1.1212 0.0000 4 8 1.7591 2.3884 -0.0005 5 6 1.9964 3.1371 -1.0957 6 1 2.4889 2.7004 -1.9519 7 6 1.6083 4.4675 -1.1231 8 7 1.0086 4.9996 -0.0795 9 14 1.9303 5.5032 -2.6440 10 1 3.2584 6.1569 -2.5257 11 1 1.9120 4.6339 -3.8479 12 1 0.8765 6.5421 -2.7676 13 6 3.6261 0.7843 0.0061 14 8 4.5744 1.5433 0.0127 15 6 3.6558 -0.7312 0.0033 16 1 4.1579 -1.1011 -0.8906 17 6 4.3510 -1.2553 1.2616 18 8 2.2505 -1.1177 -0.0043 19 1 -0.3634 0.5544 -0.8653 20 1 -0.3634 -1.0265 -0.0474 21 1 -0.3634 0.4722 0.9128 22 1 0.7368 5.9306 -0.0989 23 1 3.8108 -0.9131 2.1443 24 1 4.3636 -2.3450 1.2426 25 1 5.3742 -0.8809 1.2940 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377919.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:20 Heat of formation + Delta-G solvation = -75.585637 kcal Electronic energy + Delta-G solvation = -12636.502947 eV Core-core repulsion = 10196.491061 eV Total energy + Delta-G solvation = -2440.011886 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.072 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.97789 -37.53660 -36.60766 -32.33878 -31.75383 -30.51421 -28.23579 -24.89750 -23.55830 -20.24840 -20.07174 -17.78600 -16.78597 -15.65951 -15.35454 -14.82078 -14.20114 -13.65748 -13.30659 -13.25032 -12.90843 -12.44319 -12.24921 -11.94103 -11.91316 -11.59555 -11.30045 -11.00930 -10.73732 -10.34086 -9.81402 -8.90633 -8.19490 -7.41655 -6.10504 -3.73085 1.52382 3.24674 3.29897 3.32631 3.42338 3.50284 4.22346 4.38369 4.94046 5.13091 5.25470 5.34942 5.53967 5.66889 5.80714 5.89253 6.04586 6.07514 6.17544 6.34989 6.86993 7.36013 7.43285 8.08215 8.28769 9.33800 10.04145 11.08776 Molecular weight = 198.07amu Principal moments of inertia in cm(-1) A = 0.046350 B = 0.011426 C = 0.010101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.957083 B = 2450.000928 C = 2771.337945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.067 3.933 3 C -0.110 4.110 4 O -0.187 6.187 5 C -0.362 4.362 6 H 0.067 0.933 7 C 0.030 3.970 8 N -0.880 5.880 9 Si 0.933 3.067 10 H -0.277 1.277 11 H -0.273 1.273 12 H -0.280 1.280 13 C 0.347 3.653 14 O -0.434 6.434 15 C 0.007 3.993 16 H 0.126 0.874 17 C -0.142 4.142 18 O -0.283 6.283 19 H 0.091 0.909 20 H 0.067 0.933 21 H 0.088 0.912 22 H 0.263 0.737 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 -11.098 -0.463 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.017 3.983 3 C -0.159 4.159 4 O -0.098 6.098 5 C -0.439 4.439 6 H 0.085 0.915 7 C -0.170 4.170 8 N -0.521 5.521 9 Si 0.759 3.241 10 H -0.203 1.203 11 H -0.197 1.197 12 H -0.206 1.206 13 C 0.227 3.773 14 O -0.311 6.311 15 C -0.050 4.050 16 H 0.143 0.857 17 C -0.199 4.199 18 O -0.196 6.196 19 H 0.110 0.890 20 H 0.086 0.914 21 H 0.106 0.894 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.465 -10.677 -0.255 10.780 hybrid contribution 0.451 0.570 -0.813 1.091 sum 1.917 -10.106 -1.067 10.342 Atomic orbital electron populations 1.20411 0.85729 1.02480 1.04701 1.22212 0.94640 0.85147 0.96260 1.20081 0.92154 0.89688 1.14019 1.84116 1.70769 1.15890 1.38990 1.21025 1.39446 0.92803 0.90627 0.91516 1.25043 0.97780 0.95656 0.98555 1.70037 1.39578 1.13476 1.28978 0.85841 0.78120 0.79588 0.80557 1.20338 1.19741 1.20580 1.22226 0.91211 0.89952 0.73894 1.90569 1.43501 1.58381 1.38681 1.23836 0.81876 0.97357 1.01930 0.85668 1.21782 1.00708 1.01861 0.95566 1.87026 1.16733 1.28293 1.87506 0.89001 0.91406 0.89391 0.92738 0.91383 0.90890 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.19 36.00 0.37 -0.89 15 2 C 0.07 1.31 7.13 -35.57 -0.25 1.05 15 3 C -0.11 -2.67 6.02 -39.65 -0.24 -2.91 15 4 O -0.19 -5.52 9.64 -0.68 -0.01 -5.53 15 5 C -0.36 -10.90 9.72 30.87 0.30 -10.60 15 6 H 0.07 1.95 7.76 -52.49 -0.41 1.54 15 7 C 0.03 0.88 5.49 -17.51 -0.10 0.78 15 8 N -0.88 -27.43 13.67 55.48 0.76 -26.67 15 9 Si 0.93 22.34 29.55 -169.99 -5.02 17.32 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 15 13 C 0.35 7.76 7.00 -32.67 -0.23 7.54 15 14 O -0.43 -11.01 18.04 5.29 0.10 -10.91 15 15 C 0.01 0.12 4.41 -27.44 -0.12 0.00 15 16 H 0.13 1.73 8.14 -51.93 -0.42 1.31 15 17 C -0.14 -1.87 9.68 37.16 0.36 -1.51 15 18 O -0.28 -4.89 10.90 -14.60 -0.16 -5.05 15 19 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.09 1.42 8.14 -51.93 -0.42 1.00 15 22 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 23 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 LS Contribution 235.84 15.07 3.55 3.55 Total: -1.00 -34.66 235.84 -3.19 -37.86 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: -2.50 Total: -4.04 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 0.09 Total: -6.54 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.76 Total: -26.67 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.07 Total: -21.48 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -34.66 -3.19 -37.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377919.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.727 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds