Wall clock time and date at job start Sun Mar 29 2020 22:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.30534 * 118.19585 * 2 1 4 4 C 1.50390 * 123.19321 * 179.22100 * 3 2 1 5 5 H 1.09005 * 109.48520 * 259.13544 * 4 3 2 6 6 O 1.42900 * 109.48653 * 139.10503 * 4 3 2 7 7 C 1.34927 * 116.99970 * 90.00010 * 6 4 3 8 8 H 1.08001 * 119.99870 * 359.97438 * 7 6 4 9 9 C 1.38639 * 119.99802 * 180.02562 * 7 6 4 10 10 N 1.31576 * 120.00368 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99907 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47318 * 59.99487 * 11 9 7 13 13 H 1.48489 * 109.47294 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47040 * 299.99784 * 11 9 7 15 15 C 1.53432 * 109.39843 * 19.11244 * 4 3 2 16 16 C 1.51689 * 107.30963 * 317.89577 * 15 4 3 17 17 O 1.20834 * 121.61589 * 236.23361 * 16 15 4 18 18 O 1.34884 * 116.89633 * 56.01866 * 16 15 4 19 19 H 1.08999 * 109.47015 * 90.00290 * 1 2 3 20 20 H 1.09000 * 109.46646 * 209.99442 * 1 2 3 21 21 H 1.09000 * 109.47248 * 330.00160 * 1 2 3 22 22 H 1.08005 * 118.40176 * 359.19698 * 3 2 1 23 23 H 0.96995 * 120.00451 * 180.02562 * 10 9 7 24 24 H 1.09006 * 109.89152 * 77.34004 * 15 4 3 25 25 H 1.08999 * 109.89525 * 198.44228 * 15 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1238 1.1504 0.0000 4 6 3.6219 1.2815 0.0171 5 1 3.9551 1.5126 1.0289 6 8 4.0187 2.3318 -0.8669 7 6 4.1093 3.5719 -0.3430 8 1 3.8858 3.7347 0.7010 9 6 4.4884 4.6372 -1.1452 10 7 4.7603 4.4390 -2.4172 11 14 4.6146 6.3540 -0.4197 12 1 5.6165 6.3558 0.6764 13 1 5.0361 7.3082 -1.4765 14 1 3.2920 6.7626 0.1180 15 6 4.2543 -0.0393 -0.4407 16 6 3.4782 -1.1637 0.2185 17 8 4.0256 -1.9931 0.9059 18 8 2.1466 -1.1926 0.0055 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3632 -0.8901 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.5293 2.0521 -0.0133 23 1 5.0259 5.1842 -2.9783 24 1 4.1853 -0.1273 -1.5250 25 1 5.2984 -0.0779 -0.1304 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379430.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:03 Heat of formation + Delta-G solvation = -93.165456 kcal Electronic energy + Delta-G solvation = -12437.142299 eV Core-core repulsion = 9996.368095 eV Total energy + Delta-G solvation = -2440.774204 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.072 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.08224 -37.76924 -36.74264 -33.33337 -32.13832 -30.91265 -26.94720 -24.84929 -23.07823 -22.55072 -18.41296 -17.72285 -16.97776 -16.50786 -15.84220 -14.99059 -14.48504 -13.86027 -13.69296 -13.24089 -13.20446 -12.40263 -12.12399 -11.99929 -11.85445 -11.48902 -10.97243 -10.91275 -10.38216 -10.03854 -9.81364 -9.46474 -8.23960 -8.14259 -6.07530 -3.73705 1.76814 2.51715 3.23671 3.25254 3.28079 3.30673 4.16264 4.43518 4.91813 5.19750 5.29766 5.42587 5.51042 5.63688 5.78301 5.82503 6.08031 6.17910 6.30722 6.47334 6.78530 7.34562 7.46875 7.68394 8.29500 9.34881 9.94594 11.12372 Molecular weight = 198.07amu Principal moments of inertia in cm(-1) A = 0.050320 B = 0.009375 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.302010 B = 2985.820690 C = 3277.287318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.041 3.959 3 C -0.229 4.229 4 C 0.133 3.867 5 H 0.062 0.938 6 O -0.269 6.269 7 C -0.372 4.372 8 H 0.067 0.933 9 C 0.028 3.972 10 N -0.886 5.886 11 Si 0.928 3.072 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.277 1.277 15 C -0.164 4.164 16 C 0.496 3.504 17 O -0.454 6.454 18 O -0.305 6.305 19 H 0.078 0.922 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.139 0.861 23 H 0.261 0.739 24 H 0.117 0.883 25 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 -5.305 4.025 9.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.001 4.001 3 C -0.249 4.249 4 C 0.073 3.927 5 H 0.079 0.921 6 O -0.184 6.184 7 C -0.451 4.451 8 H 0.084 0.916 9 C -0.171 4.171 10 N -0.527 5.527 11 Si 0.754 3.246 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.203 1.203 15 C -0.202 4.202 16 C 0.337 3.663 17 O -0.335 6.335 18 O -0.221 6.221 19 H 0.096 0.904 20 H 0.090 0.910 21 H 0.103 0.897 22 H 0.157 0.843 23 H 0.071 0.929 24 H 0.135 0.865 25 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.811 -5.825 3.993 9.146 hybrid contribution 0.088 1.039 0.424 1.126 sum -5.723 -4.786 4.416 8.670 Atomic orbital electron populations 1.20740 0.87836 1.03455 1.03410 1.20320 0.93819 0.81956 1.03964 1.23585 0.99662 0.97302 1.04316 1.20427 0.88558 0.88605 0.95118 0.92054 1.85782 1.85767 1.14266 1.32565 1.20861 1.46732 0.82843 0.94638 0.91553 1.24967 0.98373 0.98347 0.95449 1.70000 1.46686 1.31287 1.04765 0.86009 0.78456 0.81986 0.78123 1.20240 1.20781 1.20254 1.22535 1.01179 0.92630 1.03885 1.23648 0.80884 0.85094 0.76664 1.90629 1.68535 1.41191 1.33107 1.84199 1.23324 1.32555 1.82017 0.90377 0.91036 0.89748 0.84294 0.92914 0.86470 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.07 36.01 0.36 -0.80 15 2 C 0.04 0.66 6.65 -35.89 -0.24 0.42 15 3 C -0.23 -4.22 9.05 -36.05 -0.33 -4.55 15 4 C 0.13 2.78 3.02 -27.81 -0.08 2.70 15 5 H 0.06 1.26 7.80 -51.93 -0.41 0.86 15 6 O -0.27 -7.23 9.41 -16.50 -0.16 -7.39 15 7 C -0.37 -10.32 9.77 30.88 0.30 -10.01 15 8 H 0.07 1.72 7.65 -52.49 -0.40 1.32 15 9 C 0.03 0.78 5.49 -17.51 -0.10 0.69 15 10 N -0.89 -26.71 13.67 55.48 0.76 -25.96 15 11 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 15 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 15 C -0.16 -3.00 6.07 -27.17 -0.16 -3.16 15 16 C 0.50 9.00 7.67 36.49 0.28 9.28 15 17 O -0.45 -9.01 17.97 -18.62 -0.33 -9.34 15 18 O -0.30 -5.33 10.16 -23.38 -0.24 -5.56 15 19 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.08 0.88 7.93 -51.93 -0.41 0.47 15 22 H 0.14 2.54 7.87 -52.48 -0.41 2.13 15 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 24 H 0.12 2.11 8.14 -51.93 -0.42 1.69 15 25 H 0.11 1.89 8.14 -51.93 -0.42 1.46 15 LS Contribution 232.00 15.07 3.50 3.50 Total: -1.00 -31.85 232.00 -3.92 -35.77 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -2.46 Total: -1.71 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 0.03 Total: -5.44 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.76 Total: -25.96 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.73 Total: -22.29 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.85 -3.92 -35.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379430.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.398 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds