Wall clock time and date at job start Sun Mar 29 2020 22:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99539 * 2 1 4 4 H 1.48498 * 109.47126 * 269.99247 * 3 2 1 5 5 H 1.48497 * 109.47278 * 29.99751 * 3 2 1 6 6 H 1.48506 * 109.46877 * 149.99785 * 3 2 1 7 7 C 1.38806 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00004 * 163.16691 * 7 2 1 9 9 N 1.36941 * 120.00302 * 343.17117 * 7 2 1 10 10 C 1.46926 * 120.62490 * 326.49199 * 9 7 2 11 11 C 1.53191 * 108.77232 * 126.36865 * 10 9 7 12 12 C 1.53041 * 109.30964 * 54.63553 * 11 10 9 13 13 C 1.53039 * 109.54037 * 298.62821 * 12 11 10 14 14 C 1.46921 * 120.62988 * 146.47118 * 9 7 2 15 15 H 1.09007 * 109.58731 * 113.84679 * 14 9 7 16 16 C 1.50693 * 109.59234 * 353.41828 * 14 9 7 17 17 O 1.20831 * 119.99897 * 322.12366 * 16 14 9 18 18 O 1.34228 * 120.00339 * 142.12887 * 16 14 9 19 19 H 0.96998 * 120.00437 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.58852 * 6.58392 * 10 9 7 21 21 H 1.08999 * 109.58271 * 246.15604 * 10 9 7 22 22 H 1.08993 * 109.50114 * 294.68360 * 11 10 9 23 23 H 1.09004 * 109.52532 * 174.59558 * 11 10 9 24 24 H 1.08998 * 109.46437 * 58.65436 * 12 11 10 25 25 H 1.09002 * 109.45622 * 178.60974 * 12 11 10 26 26 H 1.08991 * 109.50149 * 181.31978 * 13 12 11 27 27 H 1.09001 * 109.49864 * 301.42118 * 13 12 11 28 28 H 0.96700 * 116.99886 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0556 -1.2222 -0.2703 9 7 1.3697 -2.3625 0.3444 10 6 0.3010 -2.3571 1.3527 11 6 -0.9453 -3.0162 0.7538 12 6 -0.5805 -4.4079 0.2319 13 6 0.4750 -4.2814 -0.8689 14 6 1.7376 -3.6364 -0.2883 15 1 2.1779 -4.3003 0.4558 16 6 2.7298 -3.3835 -1.3939 17 8 2.6185 -2.4045 -2.0933 18 8 3.7372 -4.2458 -1.6020 19 1 -0.4851 0.8400 -0.0004 20 1 0.0709 -1.3299 1.6358 21 1 0.6242 -2.9165 2.2306 22 1 -1.3202 -2.4063 -0.0681 23 1 -1.7146 -3.1055 1.5209 24 1 -0.1827 -5.0095 1.0492 25 1 -1.4711 -4.8890 -0.1725 26 1 0.7172 -5.2709 -1.2563 27 1 0.0868 -3.6594 -1.6755 28 1 4.3486 -4.0410 -2.3226 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035297759.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:14 Heat of formation + Delta-G solvation = -72.905085 kcal Electronic energy + Delta-G solvation = -13553.548045 eV Core-core repulsion = 11184.059580 eV Total energy + Delta-G solvation = -2369.488465 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.56717 -37.08230 -35.17343 -32.96471 -30.75852 -29.81266 -25.53815 -23.56134 -22.12094 -20.51414 -18.93181 -17.26670 -16.88186 -15.52875 -14.91845 -14.37416 -14.04392 -13.42152 -13.20850 -12.71578 -12.37750 -12.01709 -11.73863 -11.13117 -10.74140 -10.73667 -10.52535 -10.35175 -10.17448 -10.09663 -9.71070 -9.40595 -9.20177 -8.33965 -6.57773 -5.75183 -3.23388 3.12129 3.42777 3.48685 3.51004 3.80338 4.54072 5.38224 5.43715 5.65053 5.71014 5.82869 6.09578 6.18650 6.27845 6.41337 6.56609 6.73905 6.78530 6.89684 6.95290 7.24174 7.50876 7.63397 7.85675 8.46337 8.82240 9.19983 9.78434 10.35399 11.31619 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.031088 B = 0.017743 C = 0.012353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.450641 B = 1577.711702 C = 2266.146722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.011 3.989 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.169 3.831 11 C -0.131 4.131 12 C -0.107 4.107 13 C -0.125 4.125 14 C 0.181 3.819 15 H 0.058 0.942 16 C 0.466 3.534 17 O -0.473 6.473 18 O -0.535 6.535 19 H 0.253 0.747 20 H 0.096 0.904 21 H 0.005 0.995 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 -7.777 0.341 7.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.188 4.188 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.080 0.920 9 N -0.304 5.304 10 C 0.044 3.956 11 C -0.170 4.170 12 C -0.145 4.145 13 C -0.164 4.164 14 C 0.073 3.927 15 H 0.075 0.925 16 C 0.305 3.695 17 O -0.356 6.356 18 O -0.347 6.347 19 H 0.063 0.937 20 H 0.114 0.886 21 H 0.023 0.977 22 H 0.095 0.905 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.011 -7.421 0.461 7.503 hybrid contribution 0.749 1.023 -0.745 1.470 sum 1.760 -6.398 -0.285 6.642 Atomic orbital electron populations 1.69987 1.05244 1.25422 1.53081 1.25094 0.95234 0.98489 1.00013 0.86290 0.79181 0.83517 0.77716 1.21350 1.21573 1.20524 1.19014 0.92198 0.83996 1.41527 0.91981 1.44257 1.42456 1.01627 1.42038 1.20881 0.85430 1.01352 0.87902 1.21942 0.98983 0.95095 1.01008 1.21402 0.97279 0.98326 0.97478 1.21937 0.96228 0.99068 0.99192 1.20317 0.90273 0.92163 0.89907 0.92497 1.23779 0.80109 0.80072 0.85492 1.90732 1.72573 1.26870 1.45375 1.84594 1.40345 1.53989 1.55769 0.93730 0.88580 0.97747 0.90542 0.93822 0.92954 0.93251 0.93008 0.91320 0.74875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 11.30 55.49 0.63 -25.22 15 2 C 0.01 0.31 4.93 -17.43 -0.09 0.23 15 3 Si 0.90 22.58 29.59 -169.99 -5.03 17.56 15 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 15 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 7 C -0.24 -6.73 7.35 -15.06 -0.11 -6.84 15 8 H 0.06 1.81 6.64 -52.48 -0.35 1.46 15 9 N -0.58 -14.69 2.96 -166.09 -0.49 -15.18 15 10 C 0.17 3.96 5.67 -3.71 -0.02 3.94 15 11 C -0.13 -2.72 6.08 -26.61 -0.16 -2.89 15 12 C -0.11 -1.91 5.88 -26.69 -0.16 -2.07 15 13 C -0.12 -2.41 5.35 -26.61 -0.14 -2.56 15 14 C 0.18 3.93 3.37 -68.75 -0.23 3.69 15 15 H 0.06 1.15 8.14 -51.92 -0.42 0.73 15 16 C 0.47 10.13 6.57 36.00 0.24 10.36 15 17 O -0.47 -12.11 15.08 -18.75 -0.28 -12.39 15 18 O -0.53 -9.11 13.42 -39.25 -0.53 -9.63 15 19 H 0.25 7.09 8.31 -40.82 -0.34 6.75 15 20 H 0.10 2.52 5.79 -51.93 -0.30 2.22 15 21 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 15 22 H 0.08 1.83 8.12 -51.93 -0.42 1.41 15 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.07 1.51 8.14 -51.93 -0.42 1.08 15 28 H 0.39 4.87 9.10 45.56 0.41 5.28 15 LS Contribution 233.85 15.07 3.52 3.52 Total: -1.00 -31.76 233.85 -5.60 -37.36 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -2.75 Total: 0.11 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.67 Total: 3.88 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.14 Total: -40.40 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.81 Total: -22.02 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.76 -5.60 -37.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035297759.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.546 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds