Wall clock time and date at job start Sun Mar 29 2020 22:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99539 * 2 1 4 4 H 1.48498 * 109.47126 * 269.99247 * 3 2 1 5 5 H 1.48497 * 109.47278 * 29.99751 * 3 2 1 6 6 H 1.48506 * 109.46877 * 149.99785 * 3 2 1 7 7 C 1.38806 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00004 * 163.16691 * 7 2 1 9 9 N 1.36941 * 120.00302 * 343.17117 * 7 2 1 10 10 C 1.46926 * 120.62490 * 326.49199 * 9 7 2 11 11 C 1.53191 * 108.77232 * 126.36865 * 10 9 7 12 12 C 1.53041 * 109.30964 * 54.63553 * 11 10 9 13 13 C 1.53039 * 109.54037 * 298.62821 * 12 11 10 14 14 C 1.46921 * 120.62988 * 146.47118 * 9 7 2 15 15 H 1.09007 * 109.58731 * 113.84679 * 14 9 7 16 16 C 1.50693 * 109.59234 * 353.41828 * 14 9 7 17 17 O 1.20831 * 119.99897 * 322.12366 * 16 14 9 18 18 O 1.34228 * 120.00339 * 142.12887 * 16 14 9 19 19 H 0.96998 * 120.00437 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.58852 * 6.58392 * 10 9 7 21 21 H 1.08999 * 109.58271 * 246.15604 * 10 9 7 22 22 H 1.08993 * 109.50114 * 294.68360 * 11 10 9 23 23 H 1.09004 * 109.52532 * 174.59558 * 11 10 9 24 24 H 1.08998 * 109.46437 * 58.65436 * 12 11 10 25 25 H 1.09002 * 109.45622 * 178.60974 * 12 11 10 26 26 H 1.08991 * 109.50149 * 181.31978 * 13 12 11 27 27 H 1.09001 * 109.49864 * 301.42118 * 13 12 11 28 28 H 0.96700 * 116.99886 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0556 -1.2222 -0.2703 9 7 1.3697 -2.3625 0.3444 10 6 0.3010 -2.3571 1.3527 11 6 -0.9453 -3.0162 0.7538 12 6 -0.5805 -4.4079 0.2319 13 6 0.4750 -4.2814 -0.8689 14 6 1.7376 -3.6364 -0.2883 15 1 2.1779 -4.3003 0.4558 16 6 2.7298 -3.3835 -1.3939 17 8 2.6185 -2.4045 -2.0933 18 8 3.7372 -4.2458 -1.6020 19 1 -0.4851 0.8400 -0.0004 20 1 0.0709 -1.3299 1.6358 21 1 0.6242 -2.9165 2.2306 22 1 -1.3202 -2.4063 -0.0681 23 1 -1.7146 -3.1055 1.5209 24 1 -0.1827 -5.0095 1.0492 25 1 -1.4711 -4.8890 -0.1725 26 1 0.7172 -5.2709 -1.2563 27 1 0.0868 -3.6594 -1.6755 28 1 4.3486 -4.0410 -2.3226 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035297759.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:13 Heat of formation + Delta-G solvation = -95.256067 kcal Electronic energy + Delta-G solvation = -13554.517257 eV Core-core repulsion = 11184.059580 eV Total energy + Delta-G solvation = -2370.457676 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26288 -38.76449 -36.81547 -34.87665 -32.54452 -31.64210 -27.43472 -25.32135 -23.90801 -22.13603 -20.65203 -18.99272 -18.72206 -17.35165 -16.67292 -16.21379 -15.80506 -15.18618 -14.84994 -14.46195 -14.04225 -13.72926 -13.40646 -13.12183 -12.69607 -12.52175 -12.26470 -12.13999 -11.98501 -11.81594 -11.44452 -11.13212 -10.97726 -10.37863 -8.55793 -7.84989 -5.35263 1.39658 1.43256 1.44440 1.52852 2.26940 2.51254 3.30907 3.62112 4.09788 4.17777 4.30565 4.47535 4.60712 4.74432 4.90368 5.02458 5.13610 5.19387 5.33134 5.36382 5.61853 5.68320 5.79184 5.90905 6.42076 7.15847 7.24847 7.77115 8.29963 9.18510 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.031088 B = 0.017743 C = 0.012353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.450641 B = 1577.711702 C = 2266.146722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.040 4.040 3 Si 0.956 3.044 4 H -0.295 1.295 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.240 4.240 8 H 0.047 0.953 9 N -0.597 5.597 10 C 0.165 3.835 11 C -0.124 4.124 12 C -0.100 4.100 13 C -0.118 4.118 14 C 0.169 3.831 15 H 0.084 0.916 16 C 0.473 3.527 17 O -0.522 6.522 18 O -0.515 6.515 19 H 0.248 0.752 20 H 0.061 0.939 21 H 0.027 0.973 22 H 0.035 0.965 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.032 0.968 28 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -9.710 0.831 9.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.237 4.237 3 Si 0.784 3.216 4 H -0.223 1.223 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.065 0.935 9 N -0.324 5.324 10 C 0.041 3.959 11 C -0.163 4.163 12 C -0.137 4.137 13 C -0.158 4.158 14 C 0.063 3.937 15 H 0.101 0.899 16 C 0.314 3.686 17 O -0.409 6.409 18 O -0.328 6.328 19 H 0.057 0.943 20 H 0.079 0.921 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.051 0.949 28 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 1.468 -9.396 0.956 9.558 hybrid contribution 0.713 1.496 -0.909 1.890 sum 2.181 -7.900 0.047 8.196 Atomic orbital electron populations 1.70119 1.06062 1.25454 1.54496 1.25717 0.96059 1.01056 1.00828 0.85472 0.78471 0.80568 0.77054 1.22262 1.21003 1.19769 1.19034 0.91821 0.85581 1.40623 0.93485 1.44372 1.42804 1.02089 1.43110 1.20873 0.86433 1.00074 0.88551 1.21802 0.98173 0.96201 1.00156 1.21387 0.97982 0.96623 0.97739 1.21890 0.95298 0.99937 0.98650 1.20558 0.91661 0.90861 0.90670 0.89858 1.23814 0.80542 0.79467 0.84728 1.90725 1.73905 1.29080 1.47201 1.84507 1.39496 1.52199 1.56626 0.94263 0.92055 0.95543 0.94648 0.91431 0.90285 0.90597 0.89215 0.94864 0.72121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 11.30 21.65 0.24 -54.24 15 2 C -0.04 -2.33 4.93 84.86 0.42 -1.91 15 3 Si 0.96 47.30 29.59 68.60 2.03 49.33 15 4 H -0.30 -14.89 7.11 99.48 0.71 -14.19 15 5 H -0.28 -13.66 7.11 99.48 0.71 -12.95 15 6 H -0.27 -12.99 7.11 99.48 0.71 -12.29 15 7 C -0.24 -13.75 7.35 84.03 0.62 -13.13 15 8 H 0.05 2.79 6.64 -2.91 -0.02 2.77 15 9 N -0.60 -30.12 2.96 -679.39 -2.01 -32.13 15 10 C 0.16 7.64 5.67 86.36 0.49 8.13 15 11 C -0.12 -5.00 6.08 30.67 0.19 -4.81 15 12 C -0.10 -3.21 5.88 30.62 0.18 -3.03 15 13 C -0.12 -4.28 5.35 30.67 0.16 -4.11 15 14 C 0.17 7.00 3.37 44.23 0.15 7.15 15 15 H 0.08 3.04 8.14 -2.38 -0.02 3.02 15 16 C 0.47 19.88 6.57 71.23 0.47 20.34 15 17 O -0.52 -26.85 15.08 21.95 0.33 -26.52 15 18 O -0.51 -16.00 13.42 -51.40 -0.69 -16.69 15 19 H 0.25 14.35 8.31 -92.71 -0.77 13.58 15 20 H 0.06 3.28 5.79 -2.39 -0.01 3.27 15 21 H 0.03 1.10 8.14 -2.39 -0.02 1.08 15 22 H 0.03 1.70 8.12 -2.39 -0.02 1.68 15 23 H 0.07 2.34 8.14 -2.39 -0.02 2.32 15 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 15 27 H 0.03 1.42 8.14 -2.39 -0.02 1.40 15 28 H 0.42 9.09 9.10 -74.06 -0.67 8.41 15 Total: -1.00 -69.81 233.85 3.07 -66.74 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 0.49 Total: 4.87 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 2.67 Total: 8.63 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -1.77 Total: -86.37 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.36 Total: -43.21 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -69.81 3.07 -66.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035297759.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.516 kcal (2) G-P(sol) polarization free energy of solvation -69.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds