Wall clock time and date at job start Sun Mar 29 2020 22:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30663 * 1 3 3 Si 1.86802 * 120.00594 * 2 1 4 4 H 1.48499 * 109.47303 * 240.00471 * 3 2 1 5 5 H 1.48506 * 109.46671 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47233 * 119.99494 * 3 2 1 7 7 C 1.40052 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00048 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00051 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99995 * 359.97438 * 9 7 2 11 11 N 1.34778 * 120.00006 * 180.02562 * 9 7 2 12 12 C 1.46503 * 120.00121 * 179.97438 * 11 9 7 13 13 C 1.53175 * 109.53763 * 85.44463 * 12 11 9 14 14 C 1.53092 * 109.16179 * 176.85076 * 13 12 11 15 15 O 1.42910 * 109.41107 * 302.39040 * 14 13 12 16 16 C 1.42900 * 114.09727 * 61.16189 * 15 14 13 17 17 C 1.53090 * 109.41229 * 298.83586 * 16 15 14 18 18 H 0.97001 * 119.99900 * 0.02562 * 1 2 3 19 19 H 0.97006 * 119.99838 * 359.97438 * 11 9 7 20 20 H 1.08997 * 109.61242 * 325.22842 * 12 11 9 21 21 H 1.09006 * 109.52647 * 296.75376 * 13 12 11 22 22 H 1.08998 * 109.52537 * 56.94268 * 13 12 11 23 23 H 1.08998 * 109.48147 * 182.40843 * 14 13 12 24 24 H 1.08997 * 109.48550 * 62.37144 * 14 13 12 25 25 H 1.09003 * 109.47953 * 178.86010 * 16 15 14 26 26 H 1.08995 * 109.49265 * 58.82602 * 16 15 14 27 27 H 1.09001 * 109.52724 * 297.70937 * 17 16 15 28 28 H 1.09000 * 109.52338 * 177.51272 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0068 -1.2129 -0.0005 8 1 3.0868 -1.2130 -0.0010 9 6 1.2749 -2.4805 -0.0017 10 8 0.0580 -2.4805 -0.0017 11 7 1.9488 -3.6478 -0.0017 12 6 1.2162 -4.9165 -0.0022 13 6 0.8614 -5.3025 -1.4415 14 6 0.1661 -6.6664 -1.4391 15 8 1.0227 -7.6351 -0.8306 16 6 1.3500 -7.3510 0.5312 17 6 2.0927 -6.0146 0.6079 18 1 -0.4850 0.8401 -0.0004 19 1 2.9188 -3.6478 -0.0013 20 1 0.3027 -4.8117 0.5830 21 1 0.1923 -4.5534 -1.8652 22 1 1.7715 -5.3586 -2.0386 23 1 -0.0504 -6.9658 -2.4645 24 1 -0.7645 -6.5992 -0.8756 25 1 1.9862 -8.1436 0.9250 26 1 0.4350 -7.2927 1.1205 27 1 3.0278 -6.0850 0.0522 28 1 2.3043 -5.7747 1.6499 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036319841.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:44 Heat of formation + Delta-G solvation = -125.270117 kcal Electronic energy + Delta-G solvation = -12880.020258 eV Core-core repulsion = 10508.261075 eV Total energy + Delta-G solvation = -2371.759183 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.58005 -38.95840 -35.78332 -34.54077 -32.16174 -32.05323 -28.43352 -25.26861 -24.52191 -21.88412 -21.24983 -19.18559 -17.49073 -17.37987 -16.92970 -16.17397 -15.93174 -15.66673 -15.10840 -14.45134 -14.31055 -14.11304 -13.26680 -13.10685 -12.77236 -12.64332 -12.41198 -12.28277 -12.07205 -11.79650 -11.32599 -10.92908 -10.70229 -9.83709 -9.47740 -8.29940 -6.87377 1.39289 1.42772 1.54482 2.23797 2.46129 2.88971 3.10451 3.57430 3.80006 3.96299 4.04863 4.20486 4.29101 4.52416 4.59973 4.73126 4.78183 4.88025 5.05766 5.17567 5.26559 5.30341 5.87086 6.20209 6.22753 6.28463 6.85438 7.54558 8.48596 8.66401 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.080937 B = 0.008017 C = 0.007697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.863150 B = 3491.890810 C = 3636.862902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.538 3.462 10 O -0.631 6.631 11 N -0.751 5.751 12 C 0.147 3.853 13 C -0.158 4.158 14 C 0.071 3.929 15 O -0.392 6.392 16 C 0.064 3.936 17 C -0.150 4.150 18 H 0.274 0.726 19 H 0.394 0.606 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.071 0.929 23 H 0.112 0.888 24 H 0.049 0.951 25 H 0.126 0.874 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -9.674 0.038 11.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.614 4.614 8 H 0.105 0.895 9 C 0.343 3.657 10 O -0.518 6.518 11 N -0.404 5.404 12 C 0.042 3.958 13 C -0.198 4.198 14 C -0.006 4.006 15 O -0.311 6.311 16 C -0.013 4.013 17 C -0.188 4.188 18 H 0.084 0.916 19 H 0.228 0.772 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.130 0.870 24 H 0.068 0.932 25 H 0.144 0.856 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.701 -9.763 -0.047 10.836 hybrid contribution 0.274 1.197 0.095 1.231 sum 4.974 -8.567 0.048 9.906 Atomic orbital electron populations 1.70179 1.09549 1.29001 1.36458 1.26975 0.95519 1.04959 0.91147 0.85063 0.78192 0.74689 0.80288 1.17867 1.19917 1.17784 1.21437 0.94746 0.90240 1.54930 0.89519 1.18595 0.86878 0.84367 0.75901 1.90543 1.16144 1.87939 1.57205 1.45895 1.09120 1.04549 1.80875 1.20680 0.95326 0.84506 0.95329 1.22528 1.01337 0.97805 0.98090 1.22544 0.91860 0.86644 0.99530 1.87867 1.68583 1.47768 1.26903 1.22717 0.99412 0.96459 0.82729 1.22421 0.99567 0.94524 1.02280 0.91572 0.77244 0.94053 0.93991 0.90995 0.86956 0.93239 0.85610 0.92888 0.89802 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.84 11.83 21.84 0.26 -50.58 15 2 C 0.03 1.63 5.50 85.31 0.47 2.10 15 3 Si 1.00 41.12 29.56 68.60 2.03 43.14 15 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 15 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 6 H -0.25 -9.80 7.11 99.48 0.71 -9.10 15 7 C -0.58 -33.05 9.54 24.83 0.24 -32.81 15 8 H 0.09 4.43 7.85 -2.91 -0.02 4.41 15 9 C 0.54 31.61 7.72 86.36 0.67 32.27 15 10 O -0.63 -42.67 14.68 -4.32 -0.06 -42.73 15 11 N -0.75 -34.20 5.08 -446.26 -2.27 -36.47 15 12 C 0.15 5.76 2.54 45.11 0.11 5.87 15 13 C -0.16 -5.77 5.72 30.68 0.18 -5.60 15 14 C 0.07 2.08 6.84 72.01 0.49 2.57 15 15 O -0.39 -10.93 10.77 -148.98 -1.60 -12.53 15 16 C 0.06 1.52 6.84 72.01 0.49 2.01 15 17 C -0.15 -4.17 5.61 30.68 0.17 -4.00 15 18 H 0.27 15.38 8.29 -92.71 -0.77 14.61 15 19 H 0.39 15.48 8.59 -92.70 -0.80 14.68 15 20 H 0.04 1.89 7.58 -2.39 -0.02 1.87 15 21 H 0.04 1.83 8.14 -2.38 -0.02 1.81 15 22 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 23 H 0.11 2.75 8.14 -2.39 -0.02 2.73 15 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 25 H 0.13 2.19 8.14 -2.39 -0.02 2.17 15 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 Total: -1.00 -75.03 240.99 1.53 -73.50 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.36 Total: 23.25 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 2.82 Total: 2.43 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -2.01 Total: -87.05 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -1.67 Total: -55.27 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -75.03 1.53 -73.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036319841.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.774 kcal (2) G-P(sol) polarization free energy of solvation -75.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds