Wall clock time and date at job start Sun Mar 29 2020 21:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00015 * 2 1 4 4 H 1.48500 * 109.47329 * 239.99961 * 3 2 1 5 5 H 1.48503 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46970 * 119.99804 * 3 2 1 7 7 C 1.37881 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99964 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00129 * 179.97438 * 10 9 7 12 12 C 1.50474 * 109.62753 * 90.95982 * 11 10 9 13 13 C 1.54071 * 112.50056 * 213.85468 * 12 11 10 14 14 C 1.54063 * 112.81676 * 318.28858 * 13 12 11 15 15 C 1.50476 * 112.49675 * 318.27911 * 14 13 12 16 16 C 1.54245 * 108.51279 * 94.15799 * 15 14 13 17 17 C 1.45537 * 112.40728 * 280.00235 * 16 15 14 18 18 H 0.96997 * 119.99668 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47244 * 59.99664 * 9 7 2 20 20 H 1.09001 * 109.46854 * 299.99377 * 9 7 2 21 21 H 1.09004 * 109.78276 * 330.48036 * 11 10 9 22 22 H 1.08996 * 108.87573 * 334.63907 * 12 11 10 23 23 H 1.08998 * 108.87259 * 93.18041 * 12 11 10 24 24 H 1.08994 * 108.81493 * 197.42170 * 13 12 11 25 25 H 1.09007 * 108.81008 * 79.14598 * 13 12 11 26 26 H 1.09002 * 108.87867 * 197.50178 * 14 13 12 27 27 H 1.09000 * 108.87817 * 79.05963 * 14 13 12 28 28 H 1.08996 * 109.62739 * 213.86202 * 15 14 13 29 29 H 1.08997 * 109.62762 * 334.25700 * 15 14 13 30 30 H 1.09006 * 108.89114 * 40.75619 * 16 15 14 31 31 H 1.09001 * 108.89095 * 159.24371 * 16 15 14 32 32 H 1.08998 * 108.89158 * 182.69134 * 17 16 15 33 33 H 1.08997 * 108.89737 * 301.27941 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 1.3688 -5.3423 -1.4158 13 6 0.0914 -6.1866 -1.5867 14 6 -0.1258 -7.1821 -0.4312 15 6 1.1494 -7.8594 -0.0073 16 6 1.7566 -7.0680 1.1692 17 6 2.4785 -5.8840 0.7274 18 1 -0.4849 0.8400 0.0004 19 1 0.6248 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8904 21 1 0.6009 -4.8245 0.5068 22 1 1.3062 -4.4717 -2.0685 23 1 2.2289 -5.9430 -1.7115 24 1 0.1599 -6.7426 -2.5216 25 1 -0.7675 -5.5175 -1.6403 26 1 -0.8396 -7.9419 -0.7497 27 1 -0.5413 -6.6466 0.4224 28 1 0.9341 -8.8796 0.3101 29 1 1.8502 -7.8756 -0.8420 30 1 0.9540 -6.7621 1.8404 31 1 2.4422 -7.7167 1.7144 32 1 2.9222 -5.3968 1.5957 33 1 3.2752 -6.1890 0.0489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040228010.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:08 Heat of formation + Delta-G solvation = -97.146358 kcal Electronic energy + Delta-G solvation = -13029.943230 eV Core-core repulsion = 10860.662590 eV Total energy + Delta-G solvation = -2169.280640 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.30014 -37.55838 -34.93139 -33.39958 -32.01388 -29.27113 -25.55010 -25.37457 -24.22875 -21.53128 -20.28571 -18.64029 -17.70177 -16.72371 -16.30047 -15.89639 -15.38203 -15.08721 -14.93468 -14.38467 -13.91035 -13.53508 -13.18095 -13.10670 -12.86472 -12.69634 -12.19752 -12.13051 -11.79063 -11.58644 -11.37208 -11.26297 -11.24630 -11.00271 -10.83342 -10.15735 -8.34307 -6.47792 1.37998 1.43333 1.51830 2.32938 2.98866 3.10312 3.72088 3.83554 4.08967 4.20093 4.25637 4.30014 4.41656 4.52889 4.53884 4.78259 4.89149 5.02215 5.03287 5.06773 5.12079 5.22190 5.30108 5.35004 5.36872 5.42382 5.44822 5.54174 5.57021 5.94841 6.53908 6.83090 7.24840 8.77912 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.065026 B = 0.007546 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.495150 B = 3709.873475 C = 3902.018719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.215 3.785 10 O -0.409 6.409 11 C 0.080 3.920 12 C -0.135 4.135 13 C -0.112 4.112 14 C -0.120 4.120 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.106 4.106 18 H 0.272 0.728 19 H -0.017 1.017 20 H -0.020 1.020 21 H 0.040 0.960 22 H 0.037 0.963 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -14.132 -0.453 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.080 0.920 9 C 0.140 3.860 10 O -0.329 6.329 11 C 0.022 3.978 12 C -0.173 4.173 13 C -0.150 4.150 14 C -0.157 4.157 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.144 4.144 18 H 0.080 0.920 19 H 0.000 1.000 20 H -0.002 1.002 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.308 -14.001 -0.453 14.069 hybrid contribution -0.253 1.126 -0.045 1.155 sum 1.055 -12.875 -0.499 12.928 Atomic orbital electron populations 1.70071 1.07831 1.28789 1.50260 1.26009 0.95999 1.03493 0.93732 0.85212 0.78110 0.76503 0.79449 1.18939 1.19768 1.18910 1.21402 0.94141 0.90958 1.52650 0.92001 1.19763 0.88522 0.84721 0.92989 1.87820 1.35706 1.14439 1.94965 1.21952 0.95830 0.83820 0.96211 1.21848 0.99764 0.99300 0.96416 1.21864 0.95832 0.97366 0.99913 1.21383 0.98771 0.97974 0.97602 1.21359 0.96738 0.99095 0.97881 1.20456 1.00318 0.95765 0.98555 1.20487 0.98495 0.95177 1.00241 0.91963 0.99952 1.00180 0.94194 0.94443 0.90467 0.90286 0.93836 0.90288 0.93412 0.89662 0.91269 0.92721 0.89803 0.92839 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.99 45.23 29.54 68.60 2.03 47.26 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.55 -34.26 9.43 25.60 0.24 -34.02 16 8 H 0.06 3.77 7.81 -2.91 -0.02 3.74 16 9 C 0.22 12.71 5.44 71.23 0.39 13.10 16 10 O -0.41 -21.25 9.88 -148.98 -1.47 -22.72 16 11 C 0.08 3.16 2.28 30.20 0.07 3.23 16 12 C -0.14 -4.69 5.05 30.14 0.15 -4.54 16 13 C -0.11 -3.10 5.85 31.32 0.18 -2.91 16 14 C -0.12 -2.75 5.31 30.14 0.16 -2.59 16 15 C -0.11 -2.28 5.60 30.20 0.17 -2.11 16 16 C -0.11 -2.67 5.26 28.74 0.15 -2.52 16 17 C -0.11 -3.31 4.94 28.73 0.14 -3.17 16 18 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 19 H -0.02 -1.07 7.95 -2.39 -0.02 -1.09 16 20 H -0.02 -1.21 8.09 -2.39 -0.02 -1.23 16 21 H 0.04 1.66 6.64 -2.38 -0.02 1.64 16 22 H 0.04 1.52 7.72 -2.39 -0.02 1.50 16 23 H 0.08 2.35 6.63 -2.39 -0.02 2.33 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.23 6.63 -2.39 -0.02 1.21 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.38 6.99 -2.39 -0.02 1.36 16 30 H 0.05 1.35 7.47 -2.38 -0.02 1.33 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 33 H 0.07 2.04 7.47 -2.39 -0.02 2.02 16 Total: -1.00 -67.62 259.21 4.01 -63.60 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.05 Total: 3.58 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 2.12 Total: -34.70 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.28 Total: -57.03 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -1.47 Total: -22.72 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -67.62 4.01 -63.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040228010.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.541 kcal (2) G-P(sol) polarization free energy of solvation -67.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds