Wall clock time and date at job start Sun Mar 29 2020 22:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00025 * 2 1 4 4 H 1.48502 * 109.46743 * 269.99718 * 3 2 1 5 5 H 1.48500 * 109.47032 * 29.99516 * 3 2 1 6 6 H 1.48499 * 109.47045 * 149.99896 * 3 2 1 7 7 C 1.37876 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00532 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99681 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99907 * 170.00050 * 10 9 7 12 12 C 1.50698 * 109.47379 * 288.30419 * 11 10 9 13 13 O 1.20829 * 120.00109 * 354.37433 * 12 11 10 14 14 O 1.34230 * 120.00101 * 174.36988 * 12 11 10 15 15 C 1.46894 * 111.00124 * 293.95643 * 10 9 7 16 16 C 1.52998 * 117.50053 * 243.10726 * 15 10 9 17 17 C 1.53007 * 60.00232 * 252.50974 * 16 15 10 18 18 H 0.96999 * 120.00090 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46959 * 60.00384 * 9 7 2 20 20 H 1.09004 * 109.47515 * 300.00634 * 9 7 2 21 21 H 1.09006 * 109.47021 * 168.30986 * 11 10 9 22 22 H 1.08991 * 109.47325 * 48.30959 * 11 10 9 23 23 H 0.96706 * 116.99947 * 180.02562 * 14 12 11 24 24 H 1.09004 * 115.55040 * 28.81698 * 15 10 9 25 25 H 1.08997 * 117.49643 * 359.97438 * 16 15 10 26 26 H 1.08995 * 117.50161 * 145.02298 * 16 15 10 27 27 H 1.08999 * 117.49705 * 252.51139 * 17 16 15 28 28 H 1.08994 * 117.52096 * 107.47663 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4501 -2.6251 -0.2366 12 6 5.7349 -2.2734 -1.6740 13 8 4.8219 -2.1109 -2.4485 14 8 7.0029 -2.1406 -2.0939 15 6 3.6512 -3.2613 1.2539 16 6 4.8008 -3.7313 2.1474 17 6 3.9763 -4.7526 1.3610 18 1 -0.4850 0.8400 -0.0004 19 1 3.8745 -0.6801 0.8912 20 1 3.8753 -0.6804 -0.8888 21 1 5.8208 -3.6288 -0.0279 22 1 5.9485 -1.9103 0.4180 23 1 7.1357 -1.9138 -3.0245 24 1 2.7444 -2.9075 1.7445 25 1 5.8168 -3.5347 1.8053 26 1 4.6506 -3.6867 3.2260 27 1 3.2837 -5.3797 1.9224 28 1 4.4496 -5.2275 0.5017 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042547116.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:51 Heat of formation + Delta-G solvation = -48.215950 kcal Electronic energy + Delta-G solvation = -12954.412688 eV Core-core repulsion = 10585.994824 eV Total energy + Delta-G solvation = -2368.417864 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.96889 -38.08181 -35.73130 -33.67548 -32.18617 -28.96942 -25.99579 -22.21443 -21.97810 -21.60434 -19.03691 -17.82680 -16.83821 -16.59931 -15.68601 -15.00083 -14.67780 -14.14246 -13.28565 -13.10929 -12.46209 -12.27809 -12.02047 -11.63422 -11.19641 -11.09734 -10.79416 -10.65775 -10.32218 -9.98095 -9.87382 -9.73684 -9.27955 -8.54423 -7.43142 -6.03238 -4.00014 2.62037 3.20600 3.30303 3.36633 3.37590 4.20971 4.43554 4.65950 5.19302 5.29305 5.34573 5.37964 5.44638 5.60699 5.68903 5.91649 6.19144 6.40606 6.53579 6.73047 6.81189 6.85228 7.51947 7.75807 7.86741 8.30079 8.63648 9.05805 9.57775 11.09923 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.027873 B = 0.013598 C = 0.010386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.327596 B = 2058.682575 C = 2695.358980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.872 3.128 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.161 3.839 10 N -0.484 5.484 11 C 0.058 3.942 12 C 0.467 3.533 13 O -0.478 6.478 14 O -0.529 6.529 15 C 0.055 3.945 16 C -0.234 4.234 17 C -0.182 4.182 18 H 0.264 0.736 19 H -0.007 1.007 20 H 0.031 0.969 21 H 0.109 0.891 22 H 0.070 0.930 23 H 0.405 0.595 24 H 0.137 0.863 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.889 -4.911 1.579 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.543 4.543 8 H 0.101 0.899 9 C 0.036 3.964 10 N -0.206 5.206 11 C -0.072 4.072 12 C 0.307 3.693 13 O -0.362 6.362 14 O -0.342 6.342 15 C -0.054 4.054 16 C -0.274 4.274 17 C -0.221 4.221 18 H 0.073 0.927 19 H 0.011 0.989 20 H 0.049 0.951 21 H 0.127 0.873 22 H 0.088 0.912 23 H 0.263 0.737 24 H 0.154 0.846 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.150 -5.058 1.355 13.230 hybrid contribution 0.903 1.468 -0.076 1.725 sum 13.053 -3.589 1.279 13.598 Atomic orbital electron populations 1.69888 1.06041 1.26789 1.51107 1.24858 0.94732 0.98713 0.94884 0.86906 0.80248 0.84229 0.78641 1.20133 1.21094 1.19370 1.20940 0.88275 0.94885 1.50153 0.89890 1.20314 0.97845 0.82869 0.95370 1.61461 1.07316 1.20208 1.31650 1.21629 0.93293 1.03104 0.89131 1.23559 0.79748 0.73971 0.92034 1.90788 1.45551 1.43866 1.55958 1.84511 1.31436 1.83429 1.34815 1.22697 0.98618 0.94169 0.89963 1.23616 0.97549 1.07326 0.98860 1.23045 1.03563 0.93377 1.02070 0.92654 0.98946 0.95056 0.87316 0.91217 0.73731 0.84580 0.89007 0.89068 0.88742 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 0.87 21.92 27.47 -169.99 -4.67 17.25 15 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 15 7 C -0.50 -14.59 8.83 -34.44 -0.30 -14.89 15 8 H 0.08 2.61 7.82 -52.49 -0.41 2.20 15 9 C 0.16 4.00 3.43 -4.98 -0.02 3.98 15 10 N -0.48 -10.21 4.30 -229.52 -0.99 -11.19 15 11 C 0.06 0.96 4.21 -4.98 -0.02 0.94 15 12 C 0.47 8.16 7.84 36.00 0.28 8.44 15 13 O -0.48 -10.49 15.93 -18.75 -0.30 -10.79 15 14 O -0.53 -6.92 13.42 -39.26 -0.53 -7.45 15 15 C 0.05 1.02 5.72 -67.71 -0.39 0.63 15 16 C -0.23 -3.34 9.54 -26.73 -0.25 -3.60 15 17 C -0.18 -2.72 9.96 -26.72 -0.27 -2.98 15 18 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 19 H -0.01 -0.17 7.18 -51.93 -0.37 -0.55 15 20 H 0.03 0.82 5.94 -51.93 -0.31 0.51 15 21 H 0.11 1.52 5.83 -51.93 -0.30 1.22 15 22 H 0.07 1.08 7.87 -51.93 -0.41 0.67 15 23 H 0.40 3.55 9.10 45.56 0.41 3.97 15 24 H 0.14 2.81 7.21 -51.93 -0.37 2.44 15 25 H 0.09 1.18 5.94 -51.93 -0.31 0.88 15 26 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 27 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 28 H 0.09 1.30 7.66 -51.93 -0.40 0.90 15 LS Contribution 239.97 15.07 3.62 3.62 Total: -1.00 -33.62 239.97 -5.64 -39.26 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -2.48 Total: 1.94 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.07 Total: -5.52 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.21 Total: -38.31 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.83 Total: -18.24 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.62 -5.64 -39.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547116.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.956 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds