Wall clock time and date at job start Sun Mar 29 2020 22:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00025 * 2 1 4 4 H 1.48502 * 109.46743 * 269.99718 * 3 2 1 5 5 H 1.48500 * 109.47032 * 29.99516 * 3 2 1 6 6 H 1.48499 * 109.47045 * 149.99896 * 3 2 1 7 7 C 1.37876 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00532 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99681 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99907 * 170.00050 * 10 9 7 12 12 C 1.50698 * 109.47379 * 288.30419 * 11 10 9 13 13 O 1.20829 * 120.00109 * 354.37433 * 12 11 10 14 14 O 1.34230 * 120.00101 * 174.36988 * 12 11 10 15 15 C 1.46894 * 111.00124 * 293.95643 * 10 9 7 16 16 C 1.52998 * 117.50053 * 243.10726 * 15 10 9 17 17 C 1.53007 * 60.00232 * 252.50974 * 16 15 10 18 18 H 0.96999 * 120.00090 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46959 * 60.00384 * 9 7 2 20 20 H 1.09004 * 109.47515 * 300.00634 * 9 7 2 21 21 H 1.09006 * 109.47021 * 168.30986 * 11 10 9 22 22 H 1.08991 * 109.47325 * 48.30959 * 11 10 9 23 23 H 0.96706 * 116.99947 * 180.02562 * 14 12 11 24 24 H 1.09004 * 115.55040 * 28.81698 * 15 10 9 25 25 H 1.08997 * 117.49643 * 359.97438 * 16 15 10 26 26 H 1.08995 * 117.50161 * 145.02298 * 16 15 10 27 27 H 1.08999 * 117.49705 * 252.51139 * 17 16 15 28 28 H 1.08994 * 117.52096 * 107.47663 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4501 -2.6251 -0.2366 12 6 5.7349 -2.2734 -1.6740 13 8 4.8219 -2.1109 -2.4485 14 8 7.0029 -2.1406 -2.0939 15 6 3.6512 -3.2613 1.2539 16 6 4.8008 -3.7313 2.1474 17 6 3.9763 -4.7526 1.3610 18 1 -0.4850 0.8400 -0.0004 19 1 3.8745 -0.6801 0.8912 20 1 3.8753 -0.6804 -0.8888 21 1 5.8208 -3.6288 -0.0279 22 1 5.9485 -1.9103 0.4180 23 1 7.1357 -1.9138 -3.0245 24 1 2.7444 -2.9075 1.7445 25 1 5.8168 -3.5347 1.8053 26 1 4.6506 -3.6867 3.2260 27 1 3.2837 -5.3797 1.9224 28 1 4.4496 -5.2275 0.5017 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042547116.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:50 Heat of formation + Delta-G solvation = -74.597737 kcal Electronic energy + Delta-G solvation = -12955.556688 eV Core-core repulsion = 10585.994824 eV Total energy + Delta-G solvation = -2369.561864 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.31819 -39.44793 -37.00132 -35.42988 -34.11449 -30.71244 -27.71146 -23.94405 -23.37440 -22.87629 -20.49913 -19.11812 -18.96592 -17.96840 -17.09816 -16.45040 -16.19280 -15.96926 -14.89911 -14.69285 -14.28727 -13.84654 -13.48125 -13.14259 -12.70498 -12.52626 -12.35165 -12.28997 -11.96323 -11.71241 -11.51238 -11.30537 -11.10757 -10.78091 -8.92254 -8.29508 -6.31755 1.29405 1.30544 1.33189 1.42320 2.00759 2.32107 2.90243 3.03061 3.28890 3.91598 4.13378 4.14573 4.21591 4.33948 4.51661 4.75605 4.81451 4.96812 5.04359 5.15106 5.31220 5.51611 5.68133 5.92779 6.25964 6.53257 6.73181 7.11568 7.30129 8.87468 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.027873 B = 0.013598 C = 0.010386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.327596 B = 2058.682575 C = 2695.358980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.246 1.246 7 C -0.510 4.510 8 H 0.037 0.963 9 C 0.176 3.824 10 N -0.508 5.508 11 C 0.054 3.946 12 C 0.475 3.525 13 O -0.534 6.534 14 O -0.510 6.510 15 C 0.008 3.992 16 C -0.198 4.198 17 C -0.167 4.167 18 H 0.267 0.733 19 H -0.001 1.001 20 H 0.020 0.980 21 H 0.143 0.857 22 H 0.092 0.908 23 H 0.426 0.574 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.976 -4.887 2.320 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.170 1.170 7 C -0.549 4.549 8 H 0.055 0.945 9 C 0.050 3.950 10 N -0.231 5.231 11 C -0.075 4.075 12 C 0.317 3.683 13 O -0.423 6.423 14 O -0.323 6.323 15 C -0.101 4.101 16 C -0.237 4.237 17 C -0.205 4.205 18 H 0.076 0.924 19 H 0.016 0.984 20 H 0.038 0.962 21 H 0.161 0.839 22 H 0.110 0.890 23 H 0.287 0.713 24 H 0.116 0.884 25 H 0.134 0.866 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.292 -5.061 2.105 16.245 hybrid contribution -0.038 1.331 -0.315 1.369 sum 15.254 -3.729 1.790 15.805 Atomic orbital electron populations 1.70046 1.08020 1.28051 1.52741 1.25825 0.95653 1.03043 0.94501 0.85769 0.79683 0.78922 0.78906 1.19947 1.20092 1.16997 1.21181 0.90920 0.93256 1.49498 0.94467 1.19946 0.94721 0.85629 0.94720 1.61261 1.10428 1.17807 1.33573 1.21810 0.90804 1.05678 0.89161 1.23708 0.80118 0.72505 0.91969 1.90783 1.47429 1.46668 1.57381 1.84451 1.28717 1.82481 1.36694 1.22518 0.99835 0.96910 0.90819 1.23693 0.96969 1.03939 0.99104 1.23137 1.03473 0.91398 1.02522 0.92420 0.98386 0.96163 0.83946 0.89022 0.71293 0.88407 0.86644 0.87543 0.87675 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.95 13.96 21.45 0.30 -60.65 15 2 C 0.01 0.41 5.47 84.65 0.46 0.88 15 3 Si 0.94 45.51 27.47 68.60 1.88 47.40 15 4 H -0.27 -13.07 7.11 99.48 0.71 -12.37 15 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 6 H -0.25 -10.88 6.54 99.48 0.65 -10.23 15 7 C -0.51 -30.72 8.83 25.60 0.23 -30.49 15 8 H 0.04 2.50 7.82 -2.91 -0.02 2.48 15 9 C 0.18 8.76 3.43 85.56 0.29 9.06 15 10 N -0.51 -21.13 4.30 -880.07 -3.79 -24.92 15 11 C 0.05 1.64 4.21 85.56 0.36 2.00 15 12 C 0.47 15.53 7.84 71.24 0.56 16.09 15 13 O -0.53 -23.24 15.93 21.96 0.35 -22.89 15 14 O -0.51 -11.55 13.42 -51.42 -0.69 -12.24 15 15 C 0.01 0.29 5.72 44.92 0.26 0.55 15 16 C -0.20 -4.94 9.54 30.60 0.29 -4.65 15 17 C -0.17 -4.59 9.96 30.60 0.30 -4.28 15 18 H 0.27 15.95 8.31 -92.71 -0.77 15.18 15 19 H 0.00 -0.07 7.18 -2.39 -0.02 -0.09 15 20 H 0.02 1.05 5.94 -2.38 -0.01 1.04 15 21 H 0.14 3.35 5.83 -2.38 -0.01 3.33 15 22 H 0.09 2.44 7.87 -2.39 -0.02 2.42 15 23 H 0.43 6.09 9.10 -74.05 -0.67 5.42 15 24 H 0.10 4.26 7.21 -2.39 -0.02 4.24 15 25 H 0.12 2.36 5.94 -2.39 -0.01 2.34 15 26 H 0.11 2.36 8.14 -2.39 -0.02 2.34 15 27 H 0.10 2.63 8.14 -2.39 -0.02 2.61 15 28 H 0.10 2.55 7.66 -2.39 -0.02 2.54 15 Total: -1.00 -76.20 239.97 1.25 -74.95 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.44 Total: 9.20 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 2.75 Total: -10.85 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -3.49 Total: -85.57 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.34 Total: -35.13 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.40 kcal Total: -76.20 1.25 -74.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547116.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.352 kcal (2) G-P(sol) polarization free energy of solvation -76.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds