Wall clock time and date at job start Sun Mar 29 2020 21:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 114.00060 * 2 1 4 4 C 1.53000 * 109.46936 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.46888 * 180.02562 * 4 3 2 6 6 N 1.30453 * 126.07579 * 90.02331 * 5 4 3 7 7 O 1.21278 * 110.68524 * 179.97438 * 6 5 4 8 8 C 1.34760 * 109.53442 * 0.02562 * 7 6 5 9 9 C 1.40336 * 126.79225 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99654 * 174.30675 * 9 8 7 11 11 C 1.40456 * 120.00313 * 354.30227 * 9 8 7 12 12 N 1.30512 * 119.99907 * 5.99493 * 11 9 8 13 13 Si 1.86800 * 120.00057 * 185.99351 * 11 9 8 14 14 H 1.48506 * 109.47318 * 94.98424 * 13 11 9 15 15 H 1.48503 * 109.47435 * 214.98213 * 13 11 9 16 16 H 1.48493 * 109.47238 * 334.98309 * 13 11 9 17 17 N 1.33331 * 106.40861 * 359.73797 * 8 7 6 18 18 H 1.09001 * 109.46866 * 60.00105 * 1 2 3 19 19 H 1.08997 * 109.47372 * 180.02562 * 1 2 3 20 20 H 1.08993 * 109.47397 * 300.00548 * 1 2 3 21 21 H 1.09003 * 109.46662 * 59.99657 * 3 2 1 22 22 H 1.08993 * 109.46955 * 299.99566 * 3 2 1 23 23 H 1.09006 * 109.46874 * 299.99865 * 4 3 2 24 24 H 1.08996 * 109.47151 * 59.99631 * 4 3 2 25 25 H 0.97002 * 119.99490 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5612 0.0013 6 7 4.4608 3.2625 1.0560 7 8 4.9369 4.3307 0.7346 8 6 4.9764 4.4203 -0.6094 9 6 5.4580 5.4997 -1.3660 10 1 5.5232 5.4191 -2.4411 11 6 5.8549 6.6849 -0.7253 12 7 5.8873 6.7427 0.5782 13 14 6.3367 8.1783 -1.7387 14 1 5.1612 9.0729 -1.8916 15 1 7.4302 8.9112 -1.0514 16 1 6.8014 7.7383 -3.0786 17 7 4.4734 3.2779 -1.0780 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.6886 1.8464 0.8900 22 1 1.6888 1.8463 -0.8900 23 1 3.8567 0.6438 0.8909 24 1 3.8575 0.6435 -0.8890 25 1 6.1618 7.5611 1.0206 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045893630.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:25:04 Heat of formation + Delta-G solvation = -30.997245 kcal Electronic energy + Delta-G solvation = -12154.490091 eV Core-core repulsion = 9748.704454 eV Total energy + Delta-G solvation = -2405.785637 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.09565 -39.00621 -36.10859 -36.09099 -33.39632 -31.32549 -28.55766 -27.45723 -24.83781 -23.63281 -22.32773 -19.57011 -18.01229 -17.48593 -17.28750 -17.13081 -16.60501 -15.93763 -15.27946 -14.42318 -14.29593 -13.61891 -13.38825 -13.20266 -13.07016 -12.52963 -12.25281 -12.11913 -11.95676 -11.84161 -11.38725 -11.02911 -10.72089 -10.33790 -8.97362 -7.11895 0.95010 1.41436 1.50161 1.62231 1.94677 2.15518 2.64934 2.99769 3.26287 3.66791 3.80115 4.04913 4.25308 4.35666 4.51844 4.54855 4.76186 4.81953 4.92937 4.94192 5.46712 5.84965 6.04760 6.08931 6.26502 6.42891 8.04842 8.26650 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.080798 B = 0.007328 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.458421 B = 3820.169488 C = 3941.693089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.086 3.914 4 C -0.010 4.010 5 C 0.168 3.832 6 N -0.493 5.493 7 O 0.012 5.988 8 C 0.269 3.731 9 C -0.432 4.432 10 H 0.123 0.877 11 C 0.028 3.972 12 N -0.794 5.794 13 Si 1.023 2.977 14 H -0.255 1.255 15 H -0.258 1.258 16 H -0.247 1.247 17 N -0.637 5.637 18 H 0.048 0.952 19 H 0.110 0.890 20 H 0.047 0.953 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.080 -2.038 -2.336 5.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.008 3.992 4 C -0.049 4.049 5 C -0.106 4.106 6 N -0.229 5.229 7 O -0.030 6.030 8 C 0.081 3.919 9 C -0.469 4.469 10 H 0.141 0.859 11 C -0.194 4.194 12 N -0.421 5.421 13 Si 0.839 3.161 14 H -0.179 1.179 15 H -0.182 1.182 16 H -0.170 1.170 17 N -0.382 5.382 18 H 0.067 0.933 19 H 0.129 0.871 20 H 0.066 0.934 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.112 0.888 24 H 0.116 0.884 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.138 -2.606 -1.666 5.997 hybrid contribution 0.107 0.888 -0.061 0.897 sum -5.031 -1.718 -1.727 5.590 Atomic orbital electron populations 1.23001 0.78983 1.04400 1.00799 1.87779 1.21957 1.27122 1.95586 1.22122 0.92092 0.84748 1.00244 1.19524 0.93485 0.86999 1.04902 1.25471 0.99932 0.99618 0.85620 1.74261 1.25436 0.97526 1.25630 1.85475 1.63915 1.28541 1.25027 1.24869 0.92323 0.93990 0.80754 1.19171 1.37859 0.94171 0.95721 0.85883 1.27420 0.91663 1.03741 0.96569 1.69699 1.29683 1.31092 1.11609 0.84581 0.79135 0.73906 0.78431 1.17922 1.18207 1.17002 1.72237 1.31482 1.06073 1.28420 0.93348 0.87131 0.93436 0.93640 0.93307 0.88768 0.88384 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.77 15 2 O -0.41 -12.55 10.70 -148.98 -1.59 -14.14 15 3 C 0.09 3.03 5.92 71.98 0.43 3.46 15 4 C -0.01 -0.41 6.21 29.85 0.19 -0.22 15 5 C 0.17 8.74 7.43 138.60 1.03 9.77 15 6 N -0.49 -28.07 12.15 -56.62 -0.69 -28.76 15 7 O 0.01 0.76 9.77 64.15 0.63 1.39 15 8 C 0.27 15.81 7.81 85.06 0.66 16.47 15 9 C -0.43 -23.02 9.47 23.32 0.22 -22.80 15 10 H 0.12 6.11 7.86 -2.91 -0.02 6.08 15 11 C 0.03 1.34 5.50 85.43 0.47 1.81 15 12 N -0.79 -40.35 12.09 21.91 0.26 -40.09 15 13 Si 1.02 34.21 29.57 68.60 2.03 36.24 15 14 H -0.26 -8.14 7.11 99.48 0.71 -7.44 15 15 H -0.26 -8.04 7.11 99.48 0.71 -7.33 15 16 H -0.25 -7.88 7.11 99.48 0.71 -7.17 15 17 N -0.64 -36.02 11.61 -305.21 -3.54 -39.56 15 18 H 0.05 0.99 8.14 -2.39 -0.02 0.97 15 19 H 0.11 1.83 8.14 -2.39 -0.02 1.81 15 20 H 0.05 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 22 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.09 3.49 8.14 -2.38 -0.02 3.47 15 24 H 0.10 3.67 8.14 -2.39 -0.02 3.65 15 25 H 0.31 13.52 8.29 -92.71 -0.77 12.75 15 Total: -1.00 -66.08 233.70 2.53 -63.54 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 1.19 Total: 11.11 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 4.24 Total: 10.27 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -3.97 Total: -108.41 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.97 Total: -12.76 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 2.03 Total: 36.24 kcal Total: -66.08 2.53 -63.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045893630.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.547 kcal (2) G-P(sol) polarization free energy of solvation -66.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds