Wall clock time and date at job start Sun Mar 29 2020 22:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99687 * 2 1 4 4 H 1.48497 * 109.46611 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47247 * 299.99876 * 3 2 1 6 6 H 1.48498 * 109.47131 * 60.00263 * 3 2 1 7 7 C 1.37877 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99433 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00079 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46751 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99984 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99841 * 180.02562 * 11 10 9 14 14 H 1.09005 * 109.82282 * 304.42984 * 13 11 10 15 15 C 1.54377 * 109.83610 * 65.41165 * 13 11 10 16 16 C 1.55300 * 102.25502 * 140.86829 * 15 13 11 17 17 C 1.54940 * 100.94415 * 325.86750 * 16 15 13 18 18 O 1.43245 * 109.83060 * 183.54456 * 13 11 10 19 19 H 0.97005 * 120.00150 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47104 * 60.00481 * 9 7 2 21 21 H 1.09000 * 109.47028 * 299.99839 * 9 7 2 22 22 H 0.96994 * 119.99873 * 0.02562 * 10 9 7 23 23 H 1.09006 * 110.84785 * 259.06560 * 15 13 11 24 24 H 1.09007 * 110.84761 * 22.67502 * 15 13 11 25 25 H 1.09007 * 111.12449 * 83.79023 * 16 15 13 26 26 H 1.09003 * 111.12579 * 207.90506 * 16 15 13 27 27 H 1.08997 * 110.31031 * 277.52940 * 17 16 15 28 28 H 1.08999 * 110.30948 * 155.35829 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 1.7538 -4.8834 -0.0025 12 8 0.5614 -5.1050 -0.0017 13 6 2.7331 -6.0287 -0.0032 14 1 3.4140 -5.9324 -0.8490 15 6 3.5328 -6.0350 1.3173 16 6 3.6349 -7.5520 1.6336 17 6 2.2756 -8.0582 1.0889 18 8 2.0267 -7.2720 -0.0872 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 3.1567 -3.4353 -0.0021 23 1 4.5224 -5.6011 1.1735 24 1 2.9886 -5.5106 2.1029 25 1 4.4674 -8.0096 1.0991 26 1 3.7178 -7.7248 2.7067 27 1 1.4889 -7.8964 1.8256 28 1 2.3416 -9.1151 0.8305 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048521420.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:04 Heat of formation + Delta-G solvation = -119.684502 kcal Electronic energy + Delta-G solvation = -12619.006004 eV Core-core repulsion = 10247.489031 eV Total energy + Delta-G solvation = -2371.516973 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.24838 -39.24330 -36.17920 -34.45549 -33.07681 -31.09542 -28.94313 -25.36708 -23.72460 -22.64913 -21.34758 -19.16215 -18.08048 -17.63464 -16.93056 -16.61590 -16.24761 -15.87682 -15.00522 -14.52079 -14.17101 -14.09114 -13.85974 -12.94468 -12.90468 -12.76643 -12.67216 -12.22808 -12.15468 -11.88701 -11.47184 -11.21309 -10.83259 -10.29007 -9.88760 -8.30008 -6.47331 1.43551 1.45053 1.58634 1.65515 2.21312 2.43443 3.00322 3.05126 3.49073 3.82982 3.87665 4.15515 4.22431 4.45013 4.78742 4.80345 4.89739 4.97677 5.08190 5.19774 5.21880 5.45674 5.64522 5.82074 5.93456 6.63500 6.86864 7.21935 7.44547 8.82702 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.073681 B = 0.007218 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.927467 B = 3878.469171 C = 4127.783604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.088 0.912 9 C 0.264 3.736 10 N -0.700 5.700 11 C 0.477 3.523 12 O -0.600 6.600 13 C 0.070 3.930 14 H 0.134 0.866 15 C -0.142 4.142 16 C -0.138 4.138 17 C 0.033 3.967 18 O -0.388 6.388 19 H 0.269 0.731 20 H -0.016 1.016 21 H -0.014 1.014 22 H 0.411 0.589 23 H 0.127 0.873 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.045 0.955 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.034 -11.318 3.299 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.173 1.173 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.106 0.894 9 C 0.141 3.859 10 N -0.351 5.351 11 C 0.264 3.736 12 O -0.482 6.482 13 C 0.009 3.991 14 H 0.151 0.849 15 C -0.180 4.180 16 C -0.175 4.175 17 C -0.043 4.043 18 O -0.307 6.307 19 H 0.078 0.922 20 H 0.002 0.998 21 H 0.004 0.996 22 H 0.247 0.753 23 H 0.145 0.855 24 H 0.083 0.917 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.063 0.937 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.910 -11.433 3.132 16.803 hybrid contribution -0.162 1.105 0.070 1.119 sum 11.747 -10.327 3.201 15.966 Atomic orbital electron populations 1.70159 1.08434 1.28560 1.50030 1.26124 0.95778 1.04093 0.93792 0.85057 0.79169 0.77033 0.77615 1.17309 1.20564 1.20481 1.21642 0.94425 0.90265 1.52814 0.89403 1.18578 0.88813 0.84522 0.93955 1.46130 1.11295 1.05093 1.72582 1.22054 0.90216 0.85523 0.75807 1.90629 1.19811 1.85616 1.52137 1.22829 0.90935 0.82389 1.02961 0.84906 1.23185 1.01825 0.99234 0.93761 1.23278 0.97265 0.93059 1.03925 1.23735 0.97115 0.96701 0.86703 1.88478 1.72509 1.27886 1.41819 0.92243 0.99770 0.99610 0.75300 0.85510 0.91735 0.87509 0.87606 0.93684 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.69 15 2 C 0.00 0.08 5.46 84.65 0.46 0.55 15 3 Si 0.99 42.19 29.54 68.60 2.03 44.22 15 4 H -0.25 -9.72 7.11 99.48 0.71 -9.01 15 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 7 C -0.55 -30.22 9.28 25.60 0.24 -29.98 15 8 H 0.09 4.27 7.60 -2.91 -0.02 4.25 15 9 C 0.26 14.89 5.43 85.63 0.46 15.35 15 10 N -0.70 -30.30 5.53 -466.78 -2.58 -32.88 15 11 C 0.48 20.64 7.03 87.66 0.62 21.26 15 12 O -0.60 -33.15 16.52 15.76 0.26 -32.89 15 13 C 0.07 2.08 3.95 30.31 0.12 2.20 15 14 H 0.13 3.13 8.14 -2.38 -0.02 3.11 15 15 C -0.14 -2.97 6.52 31.85 0.21 -2.76 15 16 C -0.14 -2.16 7.15 32.05 0.23 -1.93 15 17 C 0.03 0.77 7.78 72.65 0.56 1.33 15 18 O -0.39 -12.92 10.56 -130.19 -1.38 -14.29 15 19 H 0.27 15.24 8.31 -92.70 -0.77 14.47 15 20 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 15 21 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 15 22 H 0.41 14.13 8.32 -92.71 -0.77 13.36 15 23 H 0.13 1.76 8.14 -2.38 -0.02 1.74 15 24 H 0.06 1.62 7.84 -2.38 -0.02 1.60 15 25 H 0.11 1.17 8.14 -2.38 -0.02 1.16 15 26 H 0.11 1.26 8.14 -2.39 -0.02 1.24 15 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15 28 H 0.11 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -77.46 246.55 1.90 -75.56 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.38 Total: 10.96 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 2.90 Total: 6.01 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -2.30 Total: -89.57 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -1.12 Total: -47.18 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -77.46 1.90 -75.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048521420.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.121 kcal (2) G-P(sol) polarization free energy of solvation -77.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds