Wall clock time and date at job start Sun Mar 29 2020 22:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 180.02562 * 11 10 9 14 14 H 1.09006 * 110.43116 * 300.69914 * 13 11 10 15 15 C 1.54804 * 110.49034 * 178.15955 * 13 11 10 16 16 C 1.55229 * 101.98951 * 220.51755 * 15 13 11 17 17 O 1.44382 * 103.56240 * 36.87342 * 16 15 13 18 18 C 1.43739 * 106.98008 * 320.01696 * 17 16 15 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 23 23 H 1.09005 * 110.90788 * 338.63717 * 15 13 11 24 24 H 1.09001 * 110.91472 * 102.24015 * 15 13 11 25 25 H 1.09005 * 110.51722 * 278.38445 * 16 15 13 26 26 H 1.08996 * 110.78118 * 155.50007 * 16 15 13 27 27 H 1.09003 * 109.87511 * 267.08848 * 18 17 16 28 28 H 1.08998 * 109.87654 * 145.93571 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5617 -5.1049 0.0156 13 6 2.7333 -6.0286 0.0209 14 1 3.3775 -5.9827 -0.8572 15 6 1.9839 -7.3822 0.0729 16 6 2.8609 -8.1987 1.0596 17 8 3.2792 -7.2173 2.0325 18 6 3.5770 -6.0107 1.3103 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5529 0.8956 21 1 0.6244 -2.5609 -0.8844 22 1 3.1568 -3.4352 0.0096 23 1 0.9749 -7.2534 0.4648 24 1 1.9606 -7.8521 -0.9104 25 1 3.7239 -8.6206 0.5445 26 1 2.2767 -8.9863 1.5355 27 1 4.6373 -5.9813 1.0592 28 1 3.3128 -5.1426 1.9141 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054156774.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:59 Heat of formation + Delta-G solvation = -95.725429 kcal Electronic energy + Delta-G solvation = -12602.361989 eV Core-core repulsion = 10231.883959 eV Total energy + Delta-G solvation = -2370.478029 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.90493 -37.90809 -34.26062 -32.48356 -31.95270 -29.37637 -27.09842 -23.60425 -22.68255 -21.44512 -19.47782 -17.44071 -16.51536 -16.05190 -15.49444 -15.09222 -14.74337 -14.14681 -13.97929 -13.10141 -12.81084 -12.09428 -11.94384 -11.77925 -11.36531 -11.21172 -10.99301 -10.87722 -10.80827 -10.34425 -9.77793 -9.43180 -9.03085 -8.75579 -7.93146 -6.18137 -4.25571 3.24259 3.26020 3.29213 3.30625 3.90985 4.04332 4.34633 4.52105 4.96272 5.09274 5.15303 5.17914 5.27552 5.52887 5.67899 5.74823 5.81612 5.96084 6.26525 6.83171 7.27415 7.38598 7.48799 7.63348 7.94738 8.57498 8.74519 9.04164 9.41052 10.92045 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.072233 B = 0.007189 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.540057 B = 3894.008765 C = 4132.840307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.711 5.711 11 C 0.506 3.494 12 O -0.551 6.551 13 C -0.149 4.149 14 H 0.104 0.896 15 C -0.140 4.140 16 C 0.046 3.954 17 O -0.377 6.377 18 C 0.058 3.942 19 H 0.267 0.733 20 H 0.027 0.973 21 H 0.027 0.973 22 H 0.391 0.609 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.062 -11.311 -0.105 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.359 5.359 11 C 0.290 3.710 12 O -0.430 6.430 13 C -0.171 4.171 14 H 0.122 0.878 15 C -0.178 4.178 16 C -0.031 4.031 17 O -0.295 6.295 18 C -0.019 4.019 19 H 0.076 0.924 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.223 0.777 23 H 0.116 0.884 24 H 0.100 0.900 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.036 -11.323 0.123 13.332 hybrid contribution 0.910 1.136 -0.349 1.497 sum 7.946 -10.187 -0.226 12.921 Atomic orbital electron populations 1.69962 1.06128 1.27467 1.48718 1.24952 0.94918 0.99468 0.94640 0.86463 0.79409 0.82266 0.78699 1.20062 1.21054 1.20035 1.21180 0.93227 0.90436 1.53468 0.91919 1.19131 0.88317 0.81945 0.97801 1.46475 1.11151 1.06103 1.72149 1.20130 0.89173 0.84201 0.77461 1.90643 1.16790 1.84664 1.50917 1.22762 0.98054 0.95865 1.00377 0.87750 1.23132 1.01345 0.92782 1.00503 1.23627 0.97060 0.92238 0.90141 1.88872 1.87681 1.21792 1.31202 1.23150 0.97931 0.89062 0.91805 0.92351 0.95460 0.95501 0.77681 0.88407 0.90032 0.92340 0.88900 0.91584 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 15 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 15 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 15 8 H 0.06 1.57 7.60 -52.49 -0.40 1.18 15 9 C 0.25 6.60 5.43 -5.19 -0.03 6.57 15 10 N -0.71 -14.88 5.45 -61.47 -0.34 -15.22 15 11 C 0.51 10.12 6.95 -10.98 -0.08 10.04 15 12 O -0.55 -13.34 15.45 5.56 0.09 -13.25 15 13 C -0.15 -2.14 3.43 -90.25 -0.31 -2.45 15 14 H 0.10 1.23 8.14 -51.93 -0.42 0.80 15 15 C -0.14 -1.85 6.53 -24.60 -0.16 -2.01 15 16 C 0.05 0.53 7.72 38.34 0.30 0.82 15 17 O -0.38 -5.52 11.52 -35.23 -0.41 -5.93 15 18 C 0.06 0.78 7.33 37.73 0.28 1.06 15 19 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.39 6.93 8.32 -40.82 -0.34 6.59 15 23 H 0.10 1.56 6.90 -51.93 -0.36 1.20 15 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 28 H 0.09 1.35 7.64 -51.93 -0.40 0.95 15 LS Contribution 244.45 15.07 3.68 3.68 Total: -1.00 -32.18 244.45 -5.26 -37.44 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.59 Total: 2.22 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.42 Total: 0.66 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.40 Total: -40.59 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.32 Total: -19.18 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.18 -5.26 -37.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156774.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.286 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds