Wall clock time and date at job start Sun Mar 29 2020 22:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 180.02562 * 11 10 9 14 14 H 1.09006 * 110.43116 * 300.69914 * 13 11 10 15 15 C 1.54804 * 110.49034 * 178.15955 * 13 11 10 16 16 C 1.55229 * 101.98951 * 220.51755 * 15 13 11 17 17 O 1.44382 * 103.56240 * 36.87342 * 16 15 13 18 18 C 1.43739 * 106.98008 * 320.01696 * 17 16 15 19 19 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 21 21 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 22 22 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 23 23 H 1.09005 * 110.90788 * 338.63717 * 15 13 11 24 24 H 1.09001 * 110.91472 * 102.24015 * 15 13 11 25 25 H 1.09005 * 110.51722 * 278.38445 * 16 15 13 26 26 H 1.08996 * 110.78118 * 155.50007 * 16 15 13 27 27 H 1.09003 * 109.87511 * 267.08848 * 18 17 16 28 28 H 1.08998 * 109.87654 * 145.93571 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5617 -5.1049 0.0156 13 6 2.7333 -6.0286 0.0209 14 1 3.3775 -5.9827 -0.8572 15 6 1.9839 -7.3822 0.0729 16 6 2.8609 -8.1987 1.0596 17 8 3.2792 -7.2173 2.0325 18 6 3.5770 -6.0107 1.3103 19 1 -0.4850 0.8400 0.0004 20 1 0.6245 -2.5529 0.8956 21 1 0.6244 -2.5609 -0.8844 22 1 3.1568 -3.4352 0.0096 23 1 0.9749 -7.2534 0.4648 24 1 1.9606 -7.8521 -0.9104 25 1 3.7239 -8.6206 0.5445 26 1 2.2767 -8.9863 1.5355 27 1 4.6373 -5.9813 1.0592 28 1 3.3128 -5.1426 1.9141 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054156774.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:58 Heat of formation + Delta-G solvation = -120.933994 kcal Electronic energy + Delta-G solvation = -12603.455114 eV Core-core repulsion = 10231.883959 eV Total energy + Delta-G solvation = -2371.571155 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26364 -39.31699 -36.21319 -34.43082 -33.22482 -30.55901 -28.99237 -25.29229 -24.00236 -22.83626 -21.09348 -19.06601 -17.90233 -17.48503 -17.11112 -16.70243 -16.05804 -15.80414 -15.51781 -14.72672 -14.06429 -14.04566 -13.74330 -13.16428 -12.82752 -12.69392 -12.40830 -12.32314 -12.24891 -11.86109 -11.53208 -10.99900 -10.80933 -10.50061 -9.88382 -8.30290 -6.47513 1.42925 1.47098 1.55299 1.66491 2.29385 2.51765 2.98332 3.04663 3.39936 3.83170 3.97063 4.16493 4.33130 4.38337 4.71669 4.75507 4.85329 4.93845 5.09560 5.18157 5.20578 5.45743 5.65131 5.82400 5.87003 6.62894 6.84464 7.21498 7.43044 8.81827 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.072233 B = 0.007189 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.540057 B = 3894.008765 C = 4132.840307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.264 3.736 10 N -0.704 5.704 11 C 0.500 3.500 12 O -0.601 6.601 13 C -0.137 4.137 14 H 0.145 0.855 15 C -0.143 4.143 16 C 0.049 3.951 17 O -0.402 6.402 18 C 0.059 3.941 19 H 0.269 0.731 20 H -0.015 1.015 21 H -0.012 1.012 22 H 0.410 0.590 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.011 -11.691 -0.536 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.142 3.858 10 N -0.354 5.354 11 C 0.288 3.712 12 O -0.483 6.483 13 C -0.159 4.159 14 H 0.162 0.838 15 C -0.181 4.181 16 C -0.027 4.027 17 O -0.322 6.322 18 C -0.018 4.018 19 H 0.078 0.922 20 H 0.003 0.997 21 H 0.006 0.994 22 H 0.245 0.755 23 H 0.080 0.920 24 H 0.125 0.875 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.037 -11.737 -0.307 15.447 hybrid contribution -0.071 1.170 -0.211 1.191 sum 9.966 -10.567 -0.517 14.534 Atomic orbital electron populations 1.70133 1.08348 1.28685 1.49874 1.26087 0.95769 1.03994 0.93773 0.85188 0.77887 0.76467 0.79556 1.18502 1.21172 1.18646 1.21587 0.94361 0.90469 1.53074 0.89629 1.18567 0.88763 0.84468 0.94046 1.46204 1.11250 1.05471 1.72458 1.21238 0.89649 0.84989 0.75364 1.90622 1.19559 1.85426 1.52682 1.22825 0.97114 0.93185 1.02737 0.83777 1.23168 0.99691 0.92831 1.02375 1.23823 0.98031 0.91500 0.89308 1.88849 1.87982 1.22600 1.32741 1.23217 0.99722 0.88266 0.90572 0.92221 0.99689 0.99385 0.75450 0.92041 0.87467 0.88904 0.87739 0.87602 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.23 15 2 C 0.00 0.19 5.46 84.65 0.46 0.65 15 3 Si 0.99 42.15 29.54 68.60 2.03 44.18 15 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 15 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 15 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 7 C -0.56 -30.28 9.28 25.60 0.24 -30.04 15 8 H 0.09 4.15 7.60 -2.91 -0.02 4.13 15 9 C 0.26 14.65 5.43 85.63 0.46 15.11 15 10 N -0.70 -29.74 5.45 -466.79 -2.54 -32.28 15 11 C 0.50 20.17 6.95 87.66 0.61 20.78 15 12 O -0.60 -30.41 15.45 -3.01 -0.05 -30.46 15 13 C -0.14 -3.63 3.43 -10.55 -0.04 -3.67 15 14 H 0.14 2.74 8.14 -2.38 -0.02 2.72 15 15 C -0.14 -3.51 6.53 31.97 0.21 -3.30 15 16 C 0.05 0.97 7.72 72.75 0.56 1.54 15 17 O -0.40 -10.85 11.52 -148.98 -1.72 -12.57 15 18 C 0.06 1.45 7.33 72.35 0.53 1.98 15 19 H 0.27 15.25 8.31 -92.71 -0.77 14.48 15 20 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 15 21 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 15 22 H 0.41 13.99 8.32 -92.71 -0.77 13.22 15 23 H 0.06 1.98 6.90 -2.38 -0.02 1.97 15 24 H 0.11 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.09 1.26 8.14 -2.38 -0.02 1.24 15 26 H 0.10 1.81 8.14 -2.39 -0.02 1.79 15 27 H 0.11 1.79 8.14 -2.39 -0.02 1.77 15 28 H 0.07 1.98 7.64 -2.39 -0.02 1.96 15 Total: -1.00 -73.27 244.45 1.43 -71.84 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.39 Total: 12.47 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 3.04 Total: 3.05 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -2.26 Total: -88.51 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.76 Total: -43.02 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -73.27 1.43 -71.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156774.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.097 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds