Wall clock time and date at job start Sun Mar 29 2020 21:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46009 * 118.53565 * 2 1 4 4 C 1.53001 * 110.03876 * 161.86789 * 3 2 1 5 5 N 1.47183 * 108.71789 * 50.30603 * 4 3 2 6 6 C 1.46903 * 110.99999 * 167.62004 * 5 4 3 7 7 C 1.50699 * 109.46994 * 188.93775 * 6 5 4 8 8 H 1.08002 * 120.00516 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99783 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99707 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99956 * 180.27458 * 9 7 6 12 12 H 1.48503 * 109.47407 * 269.72718 * 11 9 7 13 13 H 1.48505 * 109.47281 * 29.72474 * 11 9 7 14 14 H 1.48501 * 109.47274 * 149.72572 * 11 9 7 15 15 C 1.46906 * 110.17528 * 290.99000 * 5 4 3 16 16 C 1.33712 * 118.53704 * 180.02562 * 2 1 3 17 17 O 1.21281 * 118.62462 * 1.66276 * 16 2 1 18 18 H 1.09003 * 109.46842 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46920 * 299.96998 * 1 2 3 20 20 H 1.09005 * 109.47551 * 59.97505 * 1 2 3 21 21 H 1.09000 * 109.37688 * 282.03983 * 3 2 1 22 22 H 1.08998 * 109.37604 * 41.80914 * 3 2 1 23 23 H 1.08996 * 109.60566 * 290.52667 * 4 3 2 24 24 H 1.08999 * 109.58309 * 170.07007 * 4 3 2 25 25 H 1.09001 * 109.46349 * 68.94032 * 6 5 4 26 26 H 1.08997 * 109.46851 * 308.94014 * 6 5 4 27 27 H 0.97005 * 119.99656 * 179.97438 * 10 9 7 28 28 H 1.08999 * 109.38398 * 170.45469 * 15 5 4 29 29 H 1.09004 * 109.38374 * 290.24633 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6130 1.0907 0.4473 5 7 4.2092 -0.0013 -0.3390 6 6 5.6676 -0.0386 -0.1668 7 6 6.2641 -1.0165 -1.1461 8 1 5.6239 -1.5567 -1.8278 9 6 7.6273 -1.2225 -1.1709 10 7 8.4067 -0.5658 -0.3397 11 14 8.3675 -2.4289 -2.3898 12 1 8.4310 -3.7787 -1.7740 13 1 7.5227 -2.4809 -3.6101 14 1 9.7373 -1.9863 -2.7547 15 6 3.6018 -1.2854 0.0355 16 6 2.1038 -1.1747 -0.0005 17 8 1.4465 -2.1934 -0.0319 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5134 0.8902 20 1 -0.3634 0.5142 -0.8898 21 1 2.1468 1.7029 -1.0056 22 1 1.6619 1.9665 0.6855 23 1 3.6383 0.8347 1.5065 24 1 4.1724 2.0108 0.2780 25 1 5.9054 -0.3516 0.8498 26 1 6.0802 0.9540 -0.3475 27 1 9.3657 -0.7110 -0.3569 28 1 3.9246 -2.0561 -0.6644 29 1 3.9190 -1.5556 1.0428 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082774814.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:13 Heat of formation + Delta-G solvation = -47.887352 kcal Electronic energy + Delta-G solvation = -12832.999671 eV Core-core repulsion = 10562.314718 eV Total energy + Delta-G solvation = -2270.684953 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.43537 -38.30787 -36.43965 -34.62770 -31.09478 -30.22844 -27.98574 -26.10163 -24.41844 -22.88260 -19.56529 -18.69657 -17.70350 -17.67926 -16.97594 -16.54114 -15.71925 -15.52776 -14.97898 -14.37348 -14.12122 -13.66404 -13.57591 -13.21630 -12.99270 -12.84717 -12.60961 -12.49629 -12.33748 -11.96584 -11.34715 -10.85052 -10.61509 -9.73332 -9.24314 -8.22460 -6.31885 1.42296 1.42573 1.47895 1.54350 2.04159 2.40065 3.04395 3.13463 3.58460 3.90061 4.17204 4.35686 4.39329 4.51965 4.65400 4.66801 4.77118 4.95164 4.98900 5.11781 5.21388 5.41194 5.62219 5.96597 6.04752 6.30191 6.48585 6.81828 7.04888 7.37935 8.88312 Molecular weight = 198.11amu Principal moments of inertia in cm(-1) A = 0.056367 B = 0.009067 C = 0.008188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.628927 B = 3087.403077 C = 3418.928788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.605 5.605 3 C 0.125 3.875 4 C 0.026 3.974 5 N -0.537 5.537 6 C 0.206 3.794 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.964 3.036 12 H -0.275 1.275 13 H -0.268 1.268 14 H -0.279 1.279 15 C 0.054 3.946 16 C 0.522 3.478 17 O -0.596 6.596 18 H 0.067 0.933 19 H 0.087 0.913 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.118 0.882 23 H 0.037 0.963 24 H 0.104 0.896 25 H -0.028 1.028 26 H 0.022 0.978 27 H 0.266 0.734 28 H 0.094 0.906 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 5.437 1.526 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.337 5.337 3 C 0.003 3.997 4 C -0.103 4.103 5 N -0.263 5.263 6 C 0.080 3.920 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.190 4.190 10 N -0.570 5.570 11 Si 0.789 3.211 12 H -0.201 1.201 13 H -0.192 1.192 14 H -0.205 1.205 15 C -0.077 4.077 16 C 0.311 3.689 17 O -0.477 6.477 18 H 0.086 0.914 19 H 0.105 0.895 20 H 0.099 0.901 21 H 0.100 0.900 22 H 0.135 0.865 23 H 0.055 0.945 24 H 0.122 0.878 25 H -0.011 1.011 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.144 5.071 1.054 13.202 hybrid contribution 1.072 -0.802 0.410 1.401 sum -11.072 4.269 1.464 11.956 Atomic orbital electron populations 1.21902 0.77907 1.03794 1.03489 1.47474 1.08483 1.06234 1.71512 1.21723 0.90594 0.83704 1.03641 1.22650 0.95660 0.96528 0.95420 1.62593 1.06666 1.02290 1.54714 1.19482 0.81865 0.96692 0.93947 1.21450 0.92323 1.23881 1.19226 0.92348 1.25798 0.97552 0.97976 0.97693 1.70050 1.04984 1.43207 1.38730 0.85461 0.77634 0.78800 0.79225 1.20064 1.19201 1.20477 1.21978 0.89382 0.95111 1.01211 1.20290 0.90375 0.83466 0.74811 1.90620 1.67554 1.36145 1.53417 0.91424 0.89470 0.90131 0.90046 0.86454 0.94464 0.87817 1.01065 0.95955 0.92548 0.88806 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 10.55 127.77 1.35 2.87 15 2 N -0.61 -17.44 3.23 -850.18 -2.74 -20.19 15 3 C 0.13 2.91 6.64 86.47 0.57 3.48 15 4 C 0.03 0.79 5.60 86.25 0.48 1.27 15 5 N -0.54 -22.28 4.72 -905.44 -4.28 -26.55 15 6 C 0.21 10.47 4.71 85.56 0.40 10.87 15 7 C -0.53 -29.61 8.59 25.60 0.22 -29.39 15 8 H 0.06 3.26 7.10 -2.91 -0.02 3.24 15 9 C 0.01 0.48 5.46 84.66 0.46 0.94 15 10 N -0.93 -54.50 13.29 21.45 0.28 -54.22 15 11 Si 0.96 44.10 29.54 68.60 2.03 46.13 15 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 13 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 14 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 15 C 0.05 2.24 5.26 85.42 0.45 2.69 15 16 C 0.52 19.74 7.57 87.68 0.66 20.40 15 17 O -0.60 -25.69 16.07 -3.03 -0.05 -25.74 15 18 H 0.07 1.78 6.67 -2.39 -0.02 1.76 15 19 H 0.09 1.36 8.14 -2.39 -0.02 1.34 15 20 H 0.08 1.39 8.14 -2.38 -0.02 1.37 15 21 H 0.08 1.80 8.14 -2.39 -0.02 1.79 15 22 H 0.12 1.76 8.13 -2.39 -0.02 1.74 15 23 H 0.04 1.13 8.08 -2.39 -0.02 1.11 15 24 H 0.10 2.93 7.91 -2.39 -0.02 2.91 15 25 H -0.03 -1.55 8.05 -2.39 -0.02 -1.57 15 26 H 0.02 1.19 7.93 -2.39 -0.02 1.17 15 27 H 0.27 14.66 8.31 -92.70 -0.77 13.89 15 28 H 0.09 4.28 7.04 -2.39 -0.02 4.27 15 29 H 0.06 2.41 8.05 -2.38 -0.02 2.39 15 Total: -1.00 -67.52 244.24 0.97 -66.54 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.12 Total: 0.89 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 4.60 Total: 13.14 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -6.73 Total: -100.96 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.05 Total: -25.74 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.52 0.97 -66.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082774814.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.658 kcal (2) G-P(sol) polarization free energy of solvation -67.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds