Wall clock time and date at job start Sun Mar 29 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.54980 * 2 1 4 4 C 1.54997 * 110.61472 * 236.95273 * 2 1 3 5 5 C 1.54810 * 102.09240 * 204.47323 * 4 2 1 6 6 C 1.54101 * 104.18639 * 20.88217 * 5 4 2 7 7 H 1.08997 * 110.00815 * 242.53493 * 6 5 4 8 8 C 1.50705 * 109.88158 * 121.45037 * 6 5 4 9 9 O 1.21284 * 120.00506 * 245.71604 * 8 6 5 10 10 N 1.34783 * 119.99577 * 65.71459 * 8 6 5 11 11 C 1.37096 * 119.99853 * 179.97438 * 10 8 6 12 12 H 1.08002 * 119.99908 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00006 * 180.02562 * 11 10 8 14 14 N 1.31417 * 119.99767 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00030 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47120 * 89.99616 * 15 13 11 17 17 H 1.48493 * 109.47009 * 209.99566 * 15 13 11 18 18 H 1.48497 * 109.47110 * 329.99747 * 15 13 11 19 19 O 1.43749 * 107.29638 * 2.02989 * 6 5 4 20 20 H 1.09001 * 109.47002 * 298.56958 * 1 2 3 21 21 H 1.08993 * 109.46955 * 58.57395 * 1 2 3 22 22 H 1.09000 * 109.47050 * 178.57224 * 1 2 3 23 23 H 1.09006 * 110.90676 * 322.67101 * 4 2 1 24 24 H 1.09002 * 110.91071 * 86.27894 * 4 2 1 25 25 H 1.08990 * 110.49098 * 262.20706 * 5 4 2 26 26 H 1.09004 * 110.60011 * 139.60946 * 5 4 2 27 27 H 0.97003 * 119.99915 * 0.02562 * 10 8 6 28 28 H 0.96999 * 119.99924 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7911 -1.2160 5 6 3.4795 -1.2178 -0.7219 6 6 3.3840 -1.1243 0.8133 7 1 4.0856 -0.3779 1.1859 8 6 3.6889 -2.4659 1.4284 9 8 2.8234 -3.0698 2.0262 10 7 4.9234 -2.9946 1.3143 11 6 5.2009 -4.2148 1.8743 12 1 4.4302 -4.7525 2.4066 13 6 6.4737 -4.7597 1.7571 14 7 7.4113 -4.1056 1.1090 15 14 6.8517 -6.4226 2.5195 16 1 6.5716 -7.4953 1.5315 17 1 8.2828 -6.4731 2.9126 18 1 6.0011 -6.6213 3.7204 19 8 2.0385 -0.7337 1.1348 20 1 -0.3633 0.4915 0.9025 21 1 -0.3633 0.5358 -0.8769 22 1 -0.3633 -1.0274 -0.0256 23 1 1.4549 -1.6627 -1.4234 24 1 2.1509 -0.1507 -2.0949 25 1 4.2406 -0.5349 -1.0990 26 1 3.6997 -2.2403 -1.0288 27 1 5.6157 -2.5114 0.8365 28 1 8.2998 -4.4861 1.0268 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087921895.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:07 Heat of formation + Delta-G solvation = -93.259594 kcal Electronic energy + Delta-G solvation = -12837.991237 eV Core-core repulsion = 10467.620134 eV Total energy + Delta-G solvation = -2370.371103 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.51682 -37.37005 -33.91379 -31.99005 -31.67669 -30.76114 -26.72439 -24.43464 -21.95235 -20.95363 -19.26065 -17.94322 -16.50183 -15.86315 -15.31081 -14.64506 -13.93479 -13.75073 -13.57420 -13.11432 -12.63349 -12.26193 -12.01350 -11.52938 -11.38565 -11.13679 -10.94409 -10.70462 -10.53812 -10.37827 -10.21595 -9.54229 -9.46150 -8.19843 -7.96551 -6.41331 -3.82256 3.18552 3.27217 3.33446 3.81142 3.99602 4.26899 4.78679 4.88558 5.08077 5.17159 5.30196 5.35725 5.55735 5.62363 5.73207 5.90642 5.98154 6.08691 6.20669 6.26375 6.32158 6.40650 7.27793 7.55865 8.06089 8.62202 9.18280 9.53467 10.05713 10.76402 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.075871 B = 0.008184 C = 0.007738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.958439 B = 3420.528227 C = 3617.467963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 H 0.066 0.934 4 C -0.147 4.147 5 C -0.146 4.146 6 C 0.069 3.931 7 H 0.078 0.922 8 C 0.443 3.557 9 O -0.577 6.577 10 N -0.560 5.560 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.269 1.269 19 O -0.344 6.344 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.393 0.607 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 7.703 -5.725 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 H 0.084 0.916 4 C -0.185 4.185 5 C -0.184 4.184 6 C 0.007 3.993 7 H 0.096 0.904 8 C 0.228 3.772 9 O -0.460 6.460 10 N -0.198 5.198 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 O -0.263 6.263 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.226 0.774 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.105 7.190 -5.143 10.744 hybrid contribution 0.934 -0.441 -0.151 1.044 sum -5.172 6.749 -5.295 10.016 Atomic orbital electron populations 1.21743 0.93459 1.03006 1.01897 1.23134 0.95159 0.95106 0.85792 0.91605 1.23164 0.96515 1.00651 0.98162 1.22938 0.97583 1.03654 0.94257 1.22515 0.85651 0.96471 0.94644 0.90394 1.19736 0.83998 0.87498 0.86008 1.90529 1.46619 1.62840 1.46016 1.41787 1.09474 1.19200 1.49338 1.19720 0.96856 0.94977 1.31333 0.87892 1.25258 0.95261 0.99931 0.97416 1.69615 1.03680 1.39061 1.41953 0.85840 0.77515 0.81409 0.79438 1.20398 1.20897 1.19373 1.89003 1.26982 1.72870 1.37413 0.91980 0.91529 0.91658 0.90403 0.90511 0.90338 0.89714 0.77383 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.66 37.16 0.36 -1.42 15 2 C 0.07 0.96 3.98 -25.67 -0.10 0.86 15 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 4 C -0.15 -2.01 6.59 -24.72 -0.16 -2.18 15 5 C -0.15 -2.34 6.62 -25.20 -0.17 -2.51 15 6 C 0.07 1.36 3.84 -27.31 -0.10 1.26 15 7 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 8 C 0.44 11.25 6.90 -10.98 -0.08 11.17 15 9 O -0.58 -17.12 16.10 -14.01 -0.23 -17.35 15 10 N -0.56 -14.64 5.27 -10.96 -0.06 -14.70 15 11 C -0.30 -8.53 9.68 -14.93 -0.14 -8.68 15 12 H 0.10 3.09 7.16 -52.49 -0.38 2.71 15 13 C 0.02 0.62 5.50 -17.46 -0.10 0.52 15 14 N -0.90 -24.64 13.05 55.50 0.72 -23.91 15 15 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 15 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 18 H -0.27 -6.16 7.11 56.52 0.40 -5.75 15 19 O -0.34 -6.95 10.44 -54.80 -0.57 -7.52 15 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.07 0.63 8.14 -51.93 -0.42 0.20 15 22 H 0.06 0.87 8.13 -51.93 -0.42 0.45 15 23 H 0.08 1.11 8.05 -51.93 -0.42 0.69 15 24 H 0.08 0.82 8.14 -51.93 -0.42 0.39 15 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.08 1.50 7.69 -51.93 -0.40 1.10 15 27 H 0.39 9.68 7.90 -40.82 -0.32 9.36 15 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 LS Contribution 244.59 15.07 3.69 3.69 Total: -1.00 -32.58 244.59 -5.57 -38.15 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -3.61 Total: 6.38 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.49 Total: -0.97 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.67 Total: -38.61 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.80 Total: -24.87 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.58 -5.57 -38.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087921895.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.107 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds