Wall clock time and date at job start Sun Mar 29 2020 21:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.46937 * 2 1 4 4 H 1.08999 * 109.47488 * 53.83749 * 3 2 1 5 5 C 1.50709 * 109.47108 * 173.83920 * 3 2 1 6 6 H 1.08002 * 120.00130 * 120.03323 * 5 3 2 7 7 C 1.37875 * 119.99748 * 300.04002 * 5 3 2 8 8 N 1.31511 * 120.00103 * 167.53966 * 7 5 3 9 9 Si 1.86798 * 120.00085 * 347.54143 * 7 5 3 10 10 H 1.48499 * 109.47398 * 264.54388 * 9 7 5 11 11 H 1.48500 * 109.47124 * 24.54366 * 9 7 5 12 12 H 1.48505 * 109.47213 * 144.54279 * 9 7 5 13 13 N 1.46904 * 109.47262 * 293.83691 * 3 2 1 14 14 C 1.47442 * 110.99807 * 77.72195 * 13 3 2 15 15 C 1.54325 * 107.23244 * 123.25760 * 14 13 3 16 16 C 1.55148 * 103.01634 * 22.28271 * 15 14 13 17 17 H 1.09004 * 110.98464 * 82.43785 * 16 15 14 18 18 N 1.46900 * 110.98958 * 206.21539 * 16 15 14 19 19 C 1.47845 * 111.00166 * 198.56758 * 13 3 2 20 20 H 1.09001 * 109.47574 * 311.11972 * 1 2 3 21 21 H 1.09001 * 109.47419 * 71.11927 * 1 2 3 22 22 H 1.09008 * 109.47299 * 191.12117 * 1 2 3 23 23 H 1.09003 * 109.47095 * 239.99546 * 2 1 3 24 24 H 1.09001 * 109.46322 * 120.00094 * 2 1 3 25 25 H 0.96998 * 120.00507 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.88526 * 242.66575 * 14 13 3 27 27 H 1.09000 * 109.88878 * 3.69054 * 14 13 3 28 28 H 1.08998 * 110.70282 * 140.66468 * 15 14 13 29 29 H 1.08992 * 110.70485 * 263.72377 * 15 14 13 30 30 H 1.00903 * 110.99926 * 298.55141 * 18 16 15 31 31 H 1.00893 * 110.99632 * 62.49710 * 18 16 15 32 32 H 1.09004 * 110.37218 * 332.46645 * 19 13 3 33 33 H 1.08992 * 110.37581 * 94.80522 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5893 1.9872 0.8297 5 6 3.5393 1.4452 0.1525 6 1 4.1593 1.8851 -0.6147 7 6 4.1194 0.8861 1.2713 8 7 5.4155 0.6651 1.2992 9 14 3.0644 0.4423 2.7476 10 1 3.0984 1.5534 3.7323 11 1 1.6650 0.2153 2.3056 12 1 3.5910 -0.7946 3.3785 13 7 1.6754 2.0907 -1.2669 14 6 0.2552 2.4869 -1.2682 15 6 0.2042 4.0048 -1.5418 16 6 1.5609 4.2793 -2.2426 17 1 1.5063 4.0426 -3.3053 18 7 1.9874 5.6699 -2.0373 19 6 2.5003 3.2948 -1.5025 20 1 -0.3634 0.6758 0.7742 21 1 -0.3634 0.3325 -0.9724 22 1 -0.3634 -1.0084 0.1982 23 1 1.8933 -0.5139 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 5.8237 0.2714 2.0861 26 1 -0.2786 1.9505 -2.0527 27 1 -0.1919 2.2672 -0.2987 28 1 -0.6273 4.2495 -2.2026 29 1 0.1299 4.5624 -0.6083 30 1 1.3199 6.3150 -2.4329 31 1 2.1382 5.8610 -1.0582 32 1 2.8271 3.7223 -0.5545 33 1 3.3602 3.0497 -2.1257 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130851417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:56 Heat of formation + Delta-G solvation = 11.044735 kcal Electronic energy + Delta-G solvation = -13511.144395 eV Core-core repulsion = 11378.848024 eV Total energy + Delta-G solvation = -2132.296371 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.81514 -35.09928 -32.41956 -31.55988 -29.67166 -26.72879 -26.41479 -22.87497 -20.78030 -20.19098 -19.45949 -16.97023 -15.87660 -15.48542 -14.48855 -14.30057 -13.50642 -13.08292 -12.94828 -12.86635 -12.35202 -12.03489 -11.95418 -11.65279 -11.31424 -10.83236 -10.62931 -10.51382 -10.38551 -9.94555 -9.76521 -9.16048 -8.91680 -8.49401 -8.44175 -7.34342 -6.08896 -4.04652 3.26058 3.36350 3.39012 4.41085 4.60092 4.95256 5.12276 5.20110 5.32800 5.43641 5.79941 5.86916 5.96737 5.99832 6.07561 6.18155 6.23559 6.43854 6.65340 6.68117 6.71806 6.78003 6.96153 7.01329 7.30292 7.38495 7.60953 7.63179 7.99222 8.10491 8.63386 8.99687 9.55509 11.03641 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035965 B = 0.013354 C = 0.010949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.345568 B = 2096.287852 C = 2556.603123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.188 3.812 4 H -0.007 1.007 5 C -0.520 4.520 6 H 0.083 0.917 7 C 0.076 3.924 8 N -0.892 5.892 9 Si 0.855 3.145 10 H -0.285 1.285 11 H -0.243 1.243 12 H -0.286 1.286 13 N -0.517 5.517 14 C 0.040 3.960 15 C -0.179 4.179 16 C 0.075 3.925 17 H 0.089 0.911 18 N -0.839 5.839 19 C 0.072 3.928 20 H 0.040 0.960 21 H 0.056 0.944 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.263 0.737 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.335 0.665 31 H 0.340 0.660 32 H 0.055 0.945 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 4.817 -3.180 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.080 3.920 4 H 0.011 0.989 5 C -0.557 4.557 6 H 0.101 0.899 7 C -0.127 4.127 8 N -0.530 5.530 9 Si 0.683 3.317 10 H -0.211 1.211 11 H -0.167 1.167 12 H -0.213 1.213 13 N -0.241 5.241 14 C -0.089 4.089 15 C -0.220 4.220 16 C -0.038 4.038 17 H 0.107 0.893 18 N -0.367 5.367 19 C -0.056 4.056 20 H 0.059 0.941 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.074 0.926 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.725 4.169 -3.904 11.278 hybrid contribution -1.498 0.328 2.202 2.683 sum -11.223 4.497 -1.702 12.210 Atomic orbital electron populations 1.22098 0.98722 0.99635 1.00779 1.22013 0.92703 0.99371 1.01563 1.19802 0.96440 0.90645 0.85083 0.98911 1.21108 0.89106 1.39067 1.06450 0.89931 1.24899 0.94724 0.94649 0.98401 1.69948 1.10536 1.43285 1.29234 0.87440 0.82850 0.78067 0.83366 1.21144 1.16700 1.21253 1.63514 1.00519 1.23916 1.36177 1.23005 0.92632 0.92641 1.00602 1.23627 0.99453 0.98594 1.00306 1.22784 0.92551 0.88488 0.99950 0.89319 1.58768 1.52215 1.03539 1.22163 1.22777 0.95598 0.88192 0.99069 0.94113 0.92508 0.94517 0.91855 0.92331 0.92703 0.91660 0.92786 0.91883 0.92239 0.85332 0.84681 0.92646 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.42 37.16 0.31 -2.50 16 2 C -0.12 -2.62 4.70 -26.74 -0.13 -2.74 16 3 C 0.19 4.44 1.18 -68.86 -0.08 4.35 16 4 H -0.01 -0.16 6.71 -51.93 -0.35 -0.51 16 5 C -0.52 -14.42 8.10 -34.44 -0.28 -14.70 16 6 H 0.08 2.49 6.54 -52.49 -0.34 2.15 16 7 C 0.08 2.16 5.36 -17.82 -0.10 2.06 16 8 N -0.89 -27.13 13.96 55.43 0.77 -26.35 16 9 Si 0.86 20.95 25.67 -169.99 -4.36 16.58 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.24 -5.55 5.11 56.52 0.29 -5.27 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 N -0.52 -10.73 5.02 -224.68 -1.13 -11.86 16 14 C 0.04 0.68 4.92 -2.83 -0.01 0.67 16 15 C -0.18 -2.60 6.64 -24.90 -0.17 -2.76 16 16 C 0.07 1.16 4.20 -65.57 -0.28 0.89 16 17 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 18 N -0.84 -11.51 9.42 -2.86 -0.03 -11.54 16 19 C 0.07 1.43 4.87 -2.30 -0.01 1.42 16 20 H 0.04 0.72 7.20 -51.93 -0.37 0.35 16 21 H 0.06 0.96 5.81 -51.93 -0.30 0.65 16 22 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 23 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.06 1.36 4.05 -51.93 -0.21 1.15 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.07 1.04 7.42 -51.93 -0.39 0.66 16 27 H 0.05 0.94 5.30 -51.93 -0.28 0.66 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.33 3.72 9.07 -39.29 -0.36 3.36 16 31 H 0.34 4.60 8.84 -39.30 -0.35 4.25 16 32 H 0.06 1.21 7.11 -51.93 -0.37 0.84 16 33 H 0.08 1.67 7.65 -51.93 -0.40 1.27 16 LS Contribution 246.48 15.07 3.71 3.71 Total: -1.00 -29.49 246.48 -6.83 -36.32 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.07 Total: 6.45 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.73 Total: -13.32 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.38 Total: -49.75 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.36 Total: 16.58 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.49 -6.83 -36.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130851417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.365 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds