Wall clock time and date at job start Sun Mar 29 2020 21:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.46937 * 2 1 4 4 H 1.08999 * 109.47488 * 53.83749 * 3 2 1 5 5 C 1.50709 * 109.47108 * 173.83920 * 3 2 1 6 6 H 1.08002 * 120.00130 * 120.03323 * 5 3 2 7 7 C 1.37875 * 119.99748 * 300.04002 * 5 3 2 8 8 N 1.31511 * 120.00103 * 167.53966 * 7 5 3 9 9 Si 1.86798 * 120.00085 * 347.54143 * 7 5 3 10 10 H 1.48499 * 109.47398 * 264.54388 * 9 7 5 11 11 H 1.48500 * 109.47124 * 24.54366 * 9 7 5 12 12 H 1.48505 * 109.47213 * 144.54279 * 9 7 5 13 13 N 1.46904 * 109.47262 * 293.83691 * 3 2 1 14 14 C 1.47442 * 110.99807 * 77.72195 * 13 3 2 15 15 C 1.54325 * 107.23244 * 123.25760 * 14 13 3 16 16 C 1.55148 * 103.01634 * 22.28271 * 15 14 13 17 17 H 1.09004 * 110.98464 * 82.43785 * 16 15 14 18 18 N 1.46900 * 110.98958 * 206.21539 * 16 15 14 19 19 C 1.47845 * 111.00166 * 198.56758 * 13 3 2 20 20 H 1.09001 * 109.47574 * 311.11972 * 1 2 3 21 21 H 1.09001 * 109.47419 * 71.11927 * 1 2 3 22 22 H 1.09008 * 109.47299 * 191.12117 * 1 2 3 23 23 H 1.09003 * 109.47095 * 239.99546 * 2 1 3 24 24 H 1.09001 * 109.46322 * 120.00094 * 2 1 3 25 25 H 0.96998 * 120.00507 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.88526 * 242.66575 * 14 13 3 27 27 H 1.09000 * 109.88878 * 3.69054 * 14 13 3 28 28 H 1.08998 * 110.70282 * 140.66468 * 15 14 13 29 29 H 1.08992 * 110.70485 * 263.72377 * 15 14 13 30 30 H 1.00903 * 110.99926 * 298.55141 * 18 16 15 31 31 H 1.00893 * 110.99632 * 62.49710 * 18 16 15 32 32 H 1.09004 * 110.37218 * 332.46645 * 19 13 3 33 33 H 1.08992 * 110.37581 * 94.80522 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5893 1.9872 0.8297 5 6 3.5393 1.4452 0.1525 6 1 4.1593 1.8851 -0.6147 7 6 4.1194 0.8861 1.2713 8 7 5.4155 0.6651 1.2992 9 14 3.0644 0.4423 2.7476 10 1 3.0984 1.5534 3.7323 11 1 1.6650 0.2153 2.3056 12 1 3.5910 -0.7946 3.3785 13 7 1.6754 2.0907 -1.2669 14 6 0.2552 2.4869 -1.2682 15 6 0.2042 4.0048 -1.5418 16 6 1.5609 4.2793 -2.2426 17 1 1.5063 4.0426 -3.3053 18 7 1.9874 5.6699 -2.0373 19 6 2.5003 3.2948 -1.5025 20 1 -0.3634 0.6758 0.7742 21 1 -0.3634 0.3325 -0.9724 22 1 -0.3634 -1.0084 0.1982 23 1 1.8933 -0.5139 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 5.8237 0.2714 2.0861 26 1 -0.2786 1.9505 -2.0527 27 1 -0.1919 2.2672 -0.2987 28 1 -0.6273 4.2495 -2.2026 29 1 0.1299 4.5624 -0.6083 30 1 1.3199 6.3150 -2.4329 31 1 2.1382 5.8610 -1.0582 32 1 2.8271 3.7223 -0.5545 33 1 3.3602 3.0497 -2.1257 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130851417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:56 Heat of formation + Delta-G solvation = -12.932421 kcal Electronic energy + Delta-G solvation = -13512.184122 eV Core-core repulsion = 11378.848024 eV Total energy + Delta-G solvation = -2133.336098 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33205 -36.67695 -34.36897 -33.10743 -31.20156 -28.43070 -27.92168 -24.68558 -22.28591 -21.59065 -21.16140 -18.89603 -17.38038 -17.17051 -16.11270 -15.81901 -15.07722 -14.73413 -14.63805 -14.33348 -13.94651 -13.58819 -13.56395 -13.16992 -12.84941 -12.68345 -12.33606 -12.01881 -11.96635 -11.55562 -11.42605 -11.05305 -10.84690 -10.60952 -9.57495 -8.99729 -8.29945 -6.30152 1.31051 1.35595 1.44951 2.33840 3.02291 3.22835 3.63784 3.81831 4.02990 4.18949 4.38300 4.44195 4.50655 4.58301 4.62799 4.79000 4.87882 4.92050 5.10985 5.13198 5.19455 5.28740 5.30609 5.37823 5.48941 5.79744 6.05407 6.17873 6.34235 6.62333 6.71058 6.77439 7.34247 8.86401 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035965 B = 0.013354 C = 0.010949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.345568 B = 2096.287852 C = 2556.603123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.194 3.806 4 H -0.010 1.010 5 C -0.522 4.522 6 H 0.039 0.961 7 C 0.017 3.983 8 N -0.944 5.944 9 Si 0.920 3.080 10 H -0.284 1.284 11 H -0.213 1.213 12 H -0.286 1.286 13 N -0.530 5.530 14 C 0.035 3.965 15 C -0.166 4.166 16 C 0.089 3.911 17 H 0.095 0.905 18 N -0.843 5.843 19 C 0.072 3.928 20 H 0.047 0.953 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.264 0.736 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.354 0.646 31 H 0.342 0.658 32 H 0.027 0.973 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.961 5.192 -3.107 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C 0.085 3.915 4 H 0.008 0.992 5 C -0.560 4.560 6 H 0.057 0.943 7 C -0.181 4.181 8 N -0.584 5.584 9 Si 0.745 3.255 10 H -0.210 1.210 11 H -0.135 1.135 12 H -0.212 1.212 13 N -0.255 5.255 14 C -0.093 4.093 15 C -0.206 4.206 16 C -0.024 4.024 17 H 0.113 0.887 18 N -0.373 5.373 19 C -0.056 4.056 20 H 0.066 0.934 21 H 0.089 0.911 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.155 0.845 32 H 0.046 0.954 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.096 4.565 -3.856 14.395 hybrid contribution -0.371 0.259 2.066 2.115 sum -13.467 4.824 -1.790 14.417 Atomic orbital electron populations 1.22005 0.94978 1.01359 1.02002 1.21924 0.96025 0.97513 1.00336 1.19643 0.93286 0.92157 0.86383 0.99212 1.21387 0.91566 1.37813 1.05246 0.94277 1.25777 0.95920 0.94827 1.01581 1.70099 1.12775 1.45236 1.30308 0.86396 0.82556 0.77577 0.79009 1.21015 1.13511 1.21187 1.63414 1.03055 1.24579 1.34450 1.23131 0.89877 0.94818 1.01461 1.23558 0.99487 0.96558 1.01037 1.22559 0.91895 0.88286 0.99647 0.88698 1.58681 1.53086 1.02992 1.22543 1.22619 0.95901 0.89356 0.97749 0.93358 0.91061 0.92370 0.93262 0.93513 0.92660 0.89806 0.92537 0.88506 0.91862 0.83116 0.84511 0.95438 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 8.42 71.98 0.61 -4.14 16 2 C -0.12 -5.11 4.70 30.59 0.14 -4.96 16 3 C 0.19 9.07 1.18 44.17 0.05 9.12 16 4 H -0.01 -0.45 6.71 -2.39 -0.02 -0.47 16 5 C -0.52 -30.09 8.10 25.60 0.21 -29.89 16 6 H 0.04 2.53 6.54 -2.91 -0.02 2.51 16 7 C 0.02 0.98 5.36 84.65 0.45 1.43 16 8 N -0.94 -59.77 13.96 21.45 0.30 -59.47 16 9 Si 0.92 43.46 25.67 68.60 1.76 45.22 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.21 -8.93 5.11 99.48 0.51 -8.42 16 12 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 13 N -0.53 -21.70 5.02 -864.75 -4.34 -26.04 16 14 C 0.04 1.08 4.92 86.65 0.43 1.51 16 15 C -0.17 -4.19 6.64 31.78 0.21 -3.98 16 16 C 0.09 2.61 4.20 46.30 0.19 2.80 16 17 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 18 N -0.84 -21.59 9.42 -162.95 -1.53 -23.13 16 19 C 0.07 2.94 4.87 86.77 0.42 3.37 16 20 H 0.05 1.50 7.20 -2.39 -0.02 1.48 16 21 H 0.07 2.10 5.81 -2.39 -0.01 2.09 16 22 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.05 2.07 4.05 -2.39 -0.01 2.07 16 25 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 26 H 0.08 2.31 7.42 -2.39 -0.02 2.29 16 27 H 0.06 1.74 5.30 -2.39 -0.01 1.73 16 28 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.35 6.81 9.07 -89.69 -0.81 6.00 16 31 H 0.34 8.80 8.84 -89.70 -0.79 8.00 16 32 H 0.03 1.25 7.11 -2.38 -0.02 1.23 16 33 H 0.04 2.07 7.65 -2.39 -0.02 2.05 16 Total: -1.00 -66.24 246.48 -1.79 -68.03 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.69 Total: 20.13 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 2.72 Total: -24.75 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -5.58 Total: -108.64 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.76 Total: 45.22 kcal Total: -66.24 -1.79 -68.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130851417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.100 kcal (2) G-P(sol) polarization free energy of solvation -66.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds