Wall clock time and date at job start Sun Mar 29 2020 22:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.86973 * 2 1 4 4 C 1.54099 * 109.88116 * 121.16034 * 2 1 3 5 5 C 1.54984 * 104.25432 * 121.59324 * 4 2 1 6 6 H 1.09003 * 110.84226 * 262.54019 * 5 4 2 7 7 C 1.50704 * 111.05029 * 138.88613 * 5 4 2 8 8 O 1.21290 * 119.99753 * 5.85540 * 7 5 4 9 9 N 1.34775 * 120.00229 * 185.85963 * 7 5 4 10 10 C 1.37092 * 120.00313 * 179.97438 * 9 7 5 11 11 H 1.07998 * 119.99799 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99899 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99794 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 120.00140 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47318 * 90.00582 * 14 12 10 16 16 H 1.48506 * 109.47223 * 210.00229 * 14 12 10 17 17 H 1.48502 * 109.47163 * 329.99878 * 14 12 10 18 18 C 1.54997 * 102.01247 * 20.66679 * 5 4 2 19 19 O 1.43743 * 109.88386 * 238.99282 * 2 1 3 20 20 H 1.09009 * 109.46637 * 179.55339 * 1 2 3 21 21 H 1.08994 * 109.47484 * 299.55315 * 1 2 3 22 22 H 1.09002 * 109.47371 * 59.55823 * 1 2 3 23 23 H 1.09006 * 110.48596 * 240.13309 * 4 2 1 24 24 H 1.08995 * 110.48837 * 2.64693 * 4 2 1 25 25 H 0.97011 * 119.99556 * 359.97438 * 9 7 5 26 26 H 0.97001 * 119.99978 * 179.97438 * 13 12 10 27 27 H 1.09002 * 110.61957 * 204.59612 * 18 5 4 28 28 H 1.09000 * 110.61969 * 81.75502 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0540 -0.7498 1.2401 5 6 2.9238 -1.8919 0.6561 6 1 2.3599 -2.8236 0.6090 7 6 4.1891 -2.0712 1.4548 8 8 4.3576 -1.4366 2.4746 9 7 5.1336 -2.9367 1.0359 10 6 6.2849 -3.0994 1.7622 11 1 6.4352 -2.5338 2.6699 12 6 7.2583 -3.9921 1.3306 13 7 8.3616 -4.1484 2.0270 14 14 6.9979 -4.9709 -0.2389 15 1 7.5385 -4.2088 -1.3931 16 1 7.7026 -6.2738 -0.1324 17 1 5.5458 -5.2085 -0.4390 18 6 3.2380 -1.3630 -0.7665 19 8 2.0188 -0.6963 -1.1586 20 1 -0.3633 -1.0277 -0.0080 21 1 -0.3634 0.5068 0.8939 22 1 -0.3634 0.5207 -0.8860 23 1 2.6619 -0.0883 1.8573 24 1 1.2246 -1.1553 1.8195 25 1 4.9987 -3.4445 0.2204 26 1 9.0410 -4.7718 1.7259 27 1 3.4586 -2.1887 -1.4430 28 1 4.0691 -0.6583 -0.7392 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162079146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:29 Heat of formation + Delta-G solvation = -90.217362 kcal Electronic energy + Delta-G solvation = -12851.025909 eV Core-core repulsion = 10480.786727 eV Total energy + Delta-G solvation = -2370.239182 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73600 -37.77337 -34.11224 -32.08813 -31.92940 -31.12469 -26.03852 -24.94450 -22.46396 -20.89808 -19.28065 -18.34127 -16.62100 -15.80815 -15.26131 -15.05695 -14.53371 -13.92462 -13.44119 -13.02610 -12.76475 -12.37141 -12.31721 -12.13552 -11.71779 -11.26258 -10.99004 -10.67346 -10.61287 -10.46813 -10.02130 -9.65391 -9.53978 -8.59776 -8.24814 -6.36595 -3.88522 2.99951 3.04104 3.12702 3.62727 3.94440 4.06000 4.59370 4.74646 4.93547 5.13303 5.23807 5.35167 5.41000 5.46222 5.62116 5.84830 5.90576 6.01548 6.06551 6.13796 6.27975 6.40387 7.03138 7.50810 8.08061 8.52267 8.88062 9.36078 9.74146 10.76199 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.060119 B = 0.009251 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.632795 B = 3026.129932 C = 3372.709585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.067 0.933 4 C -0.133 4.133 5 C -0.137 4.137 6 H 0.097 0.903 7 C 0.457 3.543 8 O -0.575 6.575 9 N -0.584 5.584 10 C -0.309 4.309 11 H 0.120 0.880 12 C 0.044 3.956 13 N -0.878 5.878 14 Si 0.878 3.122 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.268 1.268 18 C 0.057 3.943 19 O -0.377 6.377 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.094 0.906 24 H 0.077 0.923 25 H 0.371 0.629 26 H 0.274 0.726 27 H 0.094 0.906 28 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.835 3.305 -6.932 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.171 4.171 5 C -0.159 4.159 6 H 0.115 0.885 7 C 0.243 3.757 8 O -0.458 6.458 9 N -0.222 5.222 10 C -0.438 4.438 11 H 0.138 0.862 12 C -0.160 4.160 13 N -0.517 5.517 14 Si 0.704 3.296 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.194 1.194 18 C -0.020 4.020 19 O -0.297 6.297 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.113 0.887 24 H 0.095 0.905 25 H 0.204 0.796 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.593 3.619 -6.415 13.735 hybrid contribution 0.128 -0.984 -0.988 1.400 sum -11.465 2.634 -7.403 13.899 Atomic orbital electron populations 1.21924 0.94038 1.02621 1.02008 1.22788 0.94790 0.95956 0.85261 0.91503 1.22898 0.99456 0.97218 0.97518 1.22772 0.96768 1.00470 0.95925 0.88490 1.19410 0.84886 0.83855 0.87553 1.90545 1.79527 1.49283 1.26455 1.42235 1.17825 1.37930 1.24162 1.19462 0.92342 1.23520 1.08451 0.86214 1.25051 0.95413 0.97428 0.98105 1.69620 1.07520 1.36114 1.38492 0.86695 0.78567 0.80776 0.83577 1.19407 1.20021 1.19385 1.23536 0.87823 0.96656 0.94005 1.88822 1.39788 1.67729 1.33341 0.91988 0.91356 0.92258 0.88698 0.90465 0.79566 0.91498 0.88824 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.36 37.16 0.35 -1.28 15 2 C 0.07 0.96 4.06 -26.16 -0.11 0.85 15 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 4 C -0.13 -2.06 6.04 -25.11 -0.15 -2.22 15 5 C -0.14 -2.36 3.52 -89.67 -0.32 -2.68 15 6 H 0.10 1.50 8.14 -51.93 -0.42 1.08 15 7 C 0.46 10.40 7.12 -10.98 -0.08 10.33 15 8 O -0.57 -15.38 15.09 5.55 0.08 -15.29 15 9 N -0.58 -13.88 5.04 -10.96 -0.06 -13.94 15 10 C -0.31 -8.70 10.16 -14.93 -0.15 -8.86 15 11 H 0.12 3.85 7.39 -52.49 -0.39 3.46 15 12 C 0.04 1.19 5.50 -17.47 -0.10 1.09 15 13 N -0.88 -25.45 13.96 55.50 0.77 -24.68 15 14 Si 0.88 19.20 27.73 -169.99 -4.71 14.48 15 15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 16 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 17 H -0.27 -5.37 6.52 56.52 0.37 -5.00 15 18 C 0.06 0.89 7.12 38.21 0.27 1.16 15 19 O -0.38 -5.85 11.19 -35.23 -0.39 -6.24 15 20 H 0.06 0.67 8.14 -51.92 -0.42 0.25 15 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.09 1.66 6.94 -51.93 -0.36 1.30 15 24 H 0.08 1.07 7.70 -51.93 -0.40 0.67 15 25 H 0.37 7.77 5.76 -40.82 -0.24 7.54 15 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 27 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 28 H 0.07 1.10 8.04 -51.93 -0.42 0.69 15 LS Contribution 239.61 15.07 3.61 3.61 Total: -1.00 -31.44 239.61 -4.48 -35.92 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.50 Total: 7.74 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.28 Total: -1.60 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.72 Total: -38.62 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.31 Total: -21.54 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.44 -4.48 -35.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162079146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.296 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds