Wall clock time and date at job start Sun Mar 29 2020 22:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.86973 * 2 1 4 4 C 1.54099 * 109.88116 * 121.16034 * 2 1 3 5 5 C 1.54984 * 104.25432 * 121.59324 * 4 2 1 6 6 H 1.09003 * 110.84226 * 262.54019 * 5 4 2 7 7 C 1.50704 * 111.05029 * 138.88613 * 5 4 2 8 8 O 1.21290 * 119.99753 * 5.85540 * 7 5 4 9 9 N 1.34775 * 120.00229 * 185.85963 * 7 5 4 10 10 C 1.37092 * 120.00313 * 179.97438 * 9 7 5 11 11 H 1.07998 * 119.99799 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99899 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99794 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 120.00140 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47318 * 90.00582 * 14 12 10 16 16 H 1.48506 * 109.47223 * 210.00229 * 14 12 10 17 17 H 1.48502 * 109.47163 * 329.99878 * 14 12 10 18 18 C 1.54997 * 102.01247 * 20.66679 * 5 4 2 19 19 O 1.43743 * 109.88386 * 238.99282 * 2 1 3 20 20 H 1.09009 * 109.46637 * 179.55339 * 1 2 3 21 21 H 1.08994 * 109.47484 * 299.55315 * 1 2 3 22 22 H 1.09002 * 109.47371 * 59.55823 * 1 2 3 23 23 H 1.09006 * 110.48596 * 240.13309 * 4 2 1 24 24 H 1.08995 * 110.48837 * 2.64693 * 4 2 1 25 25 H 0.97011 * 119.99556 * 359.97438 * 9 7 5 26 26 H 0.97001 * 119.99978 * 179.97438 * 13 12 10 27 27 H 1.09002 * 110.61957 * 204.59612 * 18 5 4 28 28 H 1.09000 * 110.61969 * 81.75502 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0540 -0.7498 1.2401 5 6 2.9238 -1.8919 0.6561 6 1 2.3599 -2.8236 0.6090 7 6 4.1891 -2.0712 1.4548 8 8 4.3576 -1.4366 2.4746 9 7 5.1336 -2.9367 1.0359 10 6 6.2849 -3.0994 1.7622 11 1 6.4352 -2.5338 2.6699 12 6 7.2583 -3.9921 1.3306 13 7 8.3616 -4.1484 2.0270 14 14 6.9979 -4.9709 -0.2389 15 1 7.5385 -4.2088 -1.3931 16 1 7.7026 -6.2738 -0.1324 17 1 5.5458 -5.2085 -0.4390 18 6 3.2380 -1.3630 -0.7665 19 8 2.0188 -0.6963 -1.1586 20 1 -0.3633 -1.0277 -0.0080 21 1 -0.3634 0.5068 0.8939 22 1 -0.3634 0.5207 -0.8860 23 1 2.6619 -0.0883 1.8573 24 1 1.2246 -1.1553 1.8195 25 1 4.9987 -3.4445 0.2204 26 1 9.0410 -4.7718 1.7259 27 1 3.4586 -2.1887 -1.4430 28 1 4.0691 -0.6583 -0.7392 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162079146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:29 Heat of formation + Delta-G solvation = -114.063878 kcal Electronic energy + Delta-G solvation = -12852.059971 eV Core-core repulsion = 10480.786727 eV Total energy + Delta-G solvation = -2371.273244 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18845 -39.42643 -36.13316 -33.89983 -33.27905 -32.48741 -27.52159 -26.51530 -23.98111 -22.08505 -21.17718 -20.16090 -18.26284 -17.14701 -16.89204 -16.36393 -16.09938 -15.54255 -15.19233 -14.60154 -14.37035 -14.09191 -13.42058 -13.28152 -12.98385 -12.89358 -12.48811 -12.21107 -12.00135 -11.79404 -11.70550 -11.56817 -10.70603 -10.51628 -10.31138 -8.45570 -6.07656 1.29182 1.33452 1.43176 1.83340 2.20305 2.63291 3.04729 3.09759 3.46899 3.82378 3.97077 4.07927 4.21057 4.31901 4.51858 4.69422 4.71379 4.86303 5.00107 5.09383 5.12803 5.33427 5.49771 5.87915 5.89404 6.51576 6.80476 7.31483 7.85377 8.71650 Molecular weight = 199.10amu Principal moments of inertia in cm(-1) A = 0.060119 B = 0.009251 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.632795 B = 3026.129932 C = 3372.709585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 H 0.069 0.931 4 C -0.133 4.133 5 C -0.131 4.131 6 H 0.126 0.874 7 C 0.458 3.542 8 O -0.623 6.623 9 N -0.582 5.582 10 C -0.335 4.335 11 H 0.057 0.943 12 C -0.010 4.010 13 N -0.930 5.930 14 Si 0.960 3.040 15 H -0.254 1.254 16 H -0.273 1.273 17 H -0.231 1.231 18 C 0.060 3.940 19 O -0.380 6.380 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.390 0.610 26 H 0.281 0.719 27 H 0.121 0.879 28 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.963 2.317 -9.660 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.087 0.913 4 C -0.171 4.171 5 C -0.153 4.153 6 H 0.144 0.856 7 C 0.246 3.754 8 O -0.509 6.509 9 N -0.222 5.222 10 C -0.464 4.464 11 H 0.075 0.925 12 C -0.210 4.210 13 N -0.569 5.569 14 Si 0.780 3.220 15 H -0.178 1.178 16 H -0.198 1.198 17 H -0.154 1.154 18 C -0.017 4.017 19 O -0.299 6.299 20 H 0.084 0.916 21 H 0.103 0.897 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.114 0.886 25 H 0.226 0.774 26 H 0.090 0.910 27 H 0.139 0.861 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.748 2.643 -9.152 16.726 hybrid contribution 0.802 -0.574 -0.007 0.986 sum -12.947 2.069 -9.159 15.993 Atomic orbital electron populations 1.21915 0.91477 1.03330 1.03337 1.22914 0.96760 0.95543 0.83691 0.91283 1.22923 0.99398 0.96464 0.98332 1.22793 0.93835 1.02559 0.96126 0.85582 1.20493 0.85981 0.81905 0.87023 1.90528 1.80807 1.50659 1.28862 1.42043 1.16797 1.38767 1.24549 1.19042 0.95096 1.24412 1.07815 0.92499 1.26116 0.94186 0.98056 1.02625 1.69795 1.08845 1.37140 1.41166 0.85431 0.80801 0.78337 0.77468 1.17775 1.19766 1.15429 1.23540 0.87699 0.97222 0.93262 1.88832 1.39438 1.67789 1.33864 0.91568 0.89724 0.91317 0.91488 0.88620 0.77386 0.90953 0.86083 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.36 71.98 0.67 -1.95 15 2 C 0.07 1.70 4.06 30.96 0.13 1.82 15 3 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 4 C -0.13 -3.92 6.04 31.64 0.19 -3.73 15 5 C -0.13 -4.23 3.52 -10.18 -0.04 -4.27 15 6 H 0.13 3.40 8.14 -2.39 -0.02 3.38 15 7 C 0.46 20.88 7.12 87.66 0.62 21.50 15 8 O -0.62 -34.68 15.09 -3.06 -0.05 -34.72 15 9 N -0.58 -27.44 5.04 -306.99 -1.55 -28.99 15 10 C -0.33 -19.53 10.16 84.04 0.85 -18.68 15 11 H 0.06 3.95 7.39 -2.91 -0.02 3.93 15 12 C -0.01 -0.57 5.50 84.93 0.47 -0.11 15 13 N -0.93 -55.52 13.96 21.66 0.30 -55.22 15 14 Si 0.96 38.14 27.73 68.60 1.90 40.04 15 15 H -0.25 -9.49 7.11 99.48 0.71 -8.78 15 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 17 H -0.23 -7.73 6.52 99.48 0.65 -7.08 15 18 C 0.06 1.70 7.12 72.67 0.52 2.22 15 19 O -0.38 -10.51 11.19 -148.98 -1.67 -12.18 15 20 H 0.07 1.18 8.14 -2.38 -0.02 1.16 15 21 H 0.08 1.28 8.14 -2.39 -0.02 1.26 15 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 15 23 H 0.07 2.36 6.94 -2.38 -0.02 2.34 15 24 H 0.10 2.43 7.70 -2.39 -0.02 2.41 15 25 H 0.39 15.24 5.76 -92.70 -0.53 14.70 15 26 H 0.28 15.28 8.31 -92.71 -0.77 14.51 15 27 H 0.12 2.78 8.14 -2.39 -0.02 2.76 15 28 H 0.05 1.69 8.04 -2.39 -0.02 1.67 15 Total: -1.00 -72.15 239.61 2.93 -69.22 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.57 Total: 25.03 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 3.42 Total: -3.18 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.24 Total: -84.21 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -1.71 Total: -46.90 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -72.15 2.93 -69.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162079146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.843 kcal (2) G-P(sol) polarization free energy of solvation -72.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds