Wall clock time and date at job start Sun Mar 29 2020 21:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52996 * 109.47473 * 119.99974 * 2 1 3 5 5 C 1.53000 * 109.47328 * 60.00001 * 4 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 4 2 7 7 O 1.42895 * 109.47503 * 180.02562 * 6 5 4 8 8 C 1.34929 * 117.00238 * 210.00462 * 7 6 5 9 9 H 1.08003 * 120.00088 * 359.97438 * 8 7 6 10 10 C 1.38634 * 120.00194 * 180.02562 * 8 7 6 11 11 N 1.31583 * 119.99994 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00091 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47485 * 89.99345 * 12 10 8 14 14 H 1.48503 * 109.46865 * 209.99579 * 12 10 8 15 15 H 1.48504 * 109.46926 * 329.99129 * 12 10 8 16 16 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 17 17 C 1.52997 * 109.47164 * 59.99836 * 16 6 5 18 18 H 1.09004 * 109.46998 * 299.99586 * 1 2 3 19 19 H 1.09002 * 109.47722 * 60.00114 * 1 2 3 20 20 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 22 22 H 1.09002 * 109.47045 * 299.99984 * 3 2 1 23 23 H 1.09000 * 109.47140 * 59.99892 * 3 2 1 24 24 H 1.09004 * 109.47368 * 300.00213 * 4 2 1 25 25 H 1.09001 * 109.47372 * 180.02562 * 4 2 1 26 26 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.47194 * 300.00476 * 5 4 2 28 28 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 29 29 H 0.97003 * 120.00064 * 180.02562 * 11 10 8 30 30 H 1.09001 * 109.47002 * 299.99574 * 16 6 5 31 31 H 1.09000 * 109.47050 * 179.97438 * 16 6 5 32 32 H 1.09002 * 109.47045 * 180.02562 * 17 16 6 33 33 H 1.09001 * 109.47375 * 59.99966 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2493 6 6 2.0401 -2.8850 0.0001 7 8 1.5634 -4.2321 -0.0003 8 6 2.3407 -5.1568 -0.6013 9 1 3.2763 -4.8639 -1.0543 10 6 1.9378 -6.4828 -0.6383 11 7 0.7976 -6.8397 -0.0869 12 14 3.0136 -7.7629 -1.4710 13 1 3.9584 -8.3363 -0.4794 14 1 2.1587 -8.8444 -2.0232 15 1 3.7786 -7.1256 -2.5728 16 6 1.5300 -2.1637 -1.2492 17 6 2.0400 -0.7212 -1.2492 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 3.1299 1.4425 0.0005 22 1 1.6765 1.9563 -0.8900 23 1 1.6765 1.9563 0.8900 24 1 1.6767 -0.2074 2.1392 25 1 3.1300 -0.7208 1.2494 26 1 1.8931 -2.6774 2.1395 27 1 0.4401 -2.1638 1.2493 28 1 3.1300 -2.8850 -0.0001 29 1 0.5159 -7.7675 -0.1125 30 1 0.4400 -2.1638 -1.2493 31 1 1.8937 -2.6773 -2.1392 32 1 1.6763 -0.2073 -2.1390 33 1 3.1300 -0.7212 -1.2492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163215209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:15 Heat of formation + Delta-G solvation = -66.581113 kcal Electronic energy + Delta-G solvation = -13254.739394 eV Core-core repulsion = 11086.784162 eV Total energy + Delta-G solvation = -2167.955231 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.13397 -35.91824 -32.19188 -30.78496 -30.31485 -27.12304 -25.61152 -23.99582 -22.15756 -20.32924 -18.12432 -17.31604 -15.53420 -14.72960 -14.48051 -14.04877 -13.70688 -13.39499 -13.04881 -12.43603 -12.03878 -11.78927 -11.61650 -11.48421 -11.39152 -11.24976 -10.90697 -10.63623 -10.46022 -10.20006 -10.08765 -10.02101 -9.50976 -9.18872 -8.92669 -7.88763 -5.88536 -3.50840 3.34181 3.36842 3.40675 4.35650 4.95878 4.97819 5.07417 5.41971 5.51051 5.64965 5.70460 5.75987 5.85936 5.89160 5.95704 6.00670 6.04910 6.07865 6.30735 6.33513 6.35843 6.45933 6.49722 6.55662 6.74059 6.78957 6.98076 7.11044 7.17929 7.53726 8.50069 9.55331 10.27056 11.32838 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068800 B = 0.008307 C = 0.008062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.876659 B = 3369.734689 C = 3472.240376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.102 4.102 5 C -0.116 4.116 6 C 0.101 3.899 7 O -0.289 6.289 8 C -0.354 4.354 9 H 0.061 0.939 10 C 0.020 3.980 11 N -0.891 5.891 12 Si 0.922 3.078 13 H -0.282 1.282 14 H -0.284 1.284 15 H -0.276 1.276 16 C -0.139 4.139 17 C -0.104 4.104 18 H 0.048 0.952 19 H 0.048 0.952 20 H 0.069 0.931 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.257 0.743 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 13.206 -0.115 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.067 4.067 3 C -0.196 4.196 4 C -0.140 4.140 5 C -0.153 4.153 6 C 0.041 3.959 7 O -0.204 6.204 8 C -0.434 4.434 9 H 0.078 0.922 10 C -0.177 4.177 11 N -0.534 5.534 12 Si 0.749 3.251 13 H -0.208 1.208 14 H -0.210 1.210 15 H -0.201 1.201 16 C -0.177 4.177 17 C -0.141 4.141 18 H 0.067 0.933 19 H 0.067 0.933 20 H 0.088 0.912 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.758 13.013 -0.010 13.132 hybrid contribution 0.768 -0.605 -0.584 1.139 sum 2.526 12.408 -0.594 12.677 Atomic orbital electron populations 1.21972 0.94800 1.02703 1.00705 1.20549 0.95788 0.94432 0.95896 1.21863 1.00686 0.95933 1.01157 1.21542 1.00184 0.95650 0.96586 1.21582 1.01498 0.93770 0.98474 1.21696 0.95999 0.85819 0.92362 1.85669 1.46088 1.12012 1.76619 1.20869 1.01458 0.87927 1.33121 0.92177 1.24928 0.97015 0.96686 0.99115 1.70021 1.20871 1.16751 1.45806 0.86015 0.79189 0.80841 0.79038 1.20798 1.20956 1.20138 1.22116 1.01452 0.94001 1.00150 1.21566 1.00040 0.96165 0.96377 0.93264 0.93275 0.91244 0.92973 0.93039 0.93033 0.92369 0.92389 0.92035 0.91489 0.94742 0.93352 0.91703 0.92193 0.92720 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.78 37.15 0.29 -1.68 16 2 C -0.07 -0.92 0.77 -154.51 -0.12 -1.04 16 3 C -0.14 -1.58 8.47 37.16 0.31 -1.27 16 4 C -0.10 -1.52 4.73 -26.73 -0.13 -1.64 16 5 C -0.12 -2.19 5.30 -26.73 -0.14 -2.33 16 6 C 0.10 2.25 2.65 -26.73 -0.07 2.18 16 7 O -0.29 -8.41 9.42 -16.51 -0.16 -8.57 16 8 C -0.35 -10.59 9.77 30.88 0.30 -10.29 16 9 H 0.06 1.70 7.65 -52.48 -0.40 1.30 16 10 C 0.02 0.61 5.49 -17.51 -0.10 0.51 16 11 N -0.89 -28.47 13.67 55.48 0.76 -27.72 16 12 Si 0.92 22.50 29.55 -169.99 -5.02 17.48 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 16 C -0.14 -2.73 5.26 -26.73 -0.14 -2.87 16 17 C -0.10 -1.59 4.73 -26.73 -0.13 -1.72 16 18 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.07 1.08 4.81 -51.93 -0.25 0.84 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.29 6.43 -51.93 -0.33 0.95 16 28 H 0.03 0.78 7.80 -51.93 -0.41 0.37 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.06 1.30 6.43 -51.93 -0.33 0.96 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -32.34 259.92 -5.93 -38.26 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.51 Total: -3.23 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 0.08 Total: -20.15 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.76 Total: -27.72 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.16 Total: -8.57 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.34 -5.93 -38.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163215209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.318 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds