Wall clock time and date at job start Sun Mar 29 2020 21:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47147 * 2 1 4 4 C 1.46893 * 111.00472 * 293.95672 * 3 2 1 5 5 C 1.53233 * 109.34505 * 187.25086 * 4 3 2 6 6 N 1.47077 * 108.68174 * 306.07352 * 5 4 3 7 7 C 1.36936 * 120.88025 * 231.27782 * 6 5 4 8 8 H 1.07999 * 120.00107 * 151.82334 * 7 6 5 9 9 C 1.38819 * 120.00259 * 331.82799 * 7 6 5 10 10 N 1.31613 * 120.00078 * 160.63688 * 9 7 6 11 11 Si 1.86797 * 119.99633 * 340.63778 * 9 7 6 12 12 H 1.48501 * 109.47140 * 91.38169 * 11 9 7 13 13 H 1.48502 * 109.47076 * 211.37978 * 11 9 7 14 14 H 1.48495 * 109.47212 * 331.37846 * 11 9 7 15 15 C 1.47472 * 117.98482 * 51.10163 * 6 5 4 16 16 H 1.09001 * 109.59335 * 68.67240 * 15 6 5 17 17 C 1.52998 * 109.72039 * 189.09335 * 15 6 5 18 18 C 1.46902 * 110.99984 * 58.25772 * 3 2 1 19 19 H 1.09003 * 109.47245 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47118 * 299.99166 * 1 2 3 21 21 H 1.08997 * 109.47571 * 59.99743 * 1 2 3 22 22 H 1.09005 * 109.47114 * 240.00476 * 2 1 3 23 23 H 1.08997 * 109.47571 * 120.00257 * 2 1 3 24 24 H 1.09003 * 109.49518 * 67.28434 * 4 3 2 25 25 H 1.09010 * 109.49269 * 307.21480 * 4 3 2 26 26 H 1.09003 * 109.62970 * 65.87984 * 5 4 3 27 27 H 1.09002 * 109.63056 * 186.26295 * 5 4 3 28 28 H 0.97000 * 120.00268 * 179.97438 * 10 9 7 29 29 H 1.08994 * 109.47120 * 179.20811 * 17 15 6 30 30 H 1.08998 * 109.47116 * 299.21148 * 17 15 6 31 31 H 1.09002 * 109.46750 * 59.20838 * 17 15 6 32 32 H 1.09004 * 109.49222 * 292.70872 * 18 3 2 33 33 H 1.09004 * 109.49238 * 52.75645 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0670 -1.2532 5 6 2.3498 3.4399 -1.2905 6 7 1.9945 4.1748 -0.0671 7 6 1.4959 5.4485 -0.1321 8 1 0.8364 5.8104 0.6428 9 6 1.8379 6.2745 -1.1940 10 7 1.0967 7.3249 -1.4760 11 14 3.3501 5.8951 -2.2228 12 1 2.9639 5.0401 -3.3740 13 1 3.9390 7.1630 -2.7237 14 1 4.3497 5.1806 -1.3889 15 6 2.1881 3.4969 1.2282 16 1 3.2540 3.3745 1.4210 17 6 1.5560 4.3289 2.3459 18 6 1.5149 2.1218 1.1663 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 0.5891 2.1946 -1.3086 25 1 2.0100 1.4697 -2.0994 26 1 3.4311 3.3119 -1.3398 27 1 2.0066 3.9947 -2.1637 28 1 1.3359 7.9023 -2.2178 29 1 1.6891 3.8175 3.2992 30 1 2.0367 5.3062 2.3876 31 1 0.4918 4.4556 2.1470 32 1 0.4359 2.2487 1.0773 33 1 1.7417 1.5641 2.0750 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223321428.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:12 Heat of formation + Delta-G solvation = 31.078945 kcal Electronic energy + Delta-G solvation = -13661.092797 eV Core-core repulsion = 11529.665175 eV Total energy + Delta-G solvation = -2131.427622 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.69944 -35.24277 -32.25337 -31.38336 -29.71448 -26.89011 -25.66216 -23.37195 -22.51021 -20.54307 -19.02271 -16.35534 -15.66747 -14.96832 -14.67054 -14.35268 -14.05925 -13.49004 -13.36904 -12.51261 -12.10448 -12.05929 -11.84412 -11.55296 -11.42178 -11.20404 -10.70843 -10.63023 -10.28233 -10.25155 -9.92989 -9.61630 -9.35683 -8.59430 -7.87978 -6.86364 -5.88976 -3.24949 3.36783 3.53105 3.58572 4.35165 4.59189 4.94845 5.17508 5.29779 5.41128 5.54344 5.71226 5.76092 5.82922 5.93385 6.02363 6.05886 6.12467 6.20372 6.26891 6.33630 6.37983 6.51802 6.58004 6.77005 6.96117 7.10102 7.53829 7.55913 8.01678 8.40257 8.99102 9.78502 10.19328 11.26957 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041575 B = 0.013219 C = 0.011526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.315186 B = 2117.718676 C = 2428.789189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.050 3.950 3 N -0.536 5.536 4 C 0.041 3.959 5 C 0.129 3.871 6 N -0.605 5.605 7 C -0.254 4.254 8 H 0.091 0.909 9 C 0.021 3.979 10 N -0.913 5.913 11 Si 0.883 3.117 12 H -0.289 1.289 13 H -0.305 1.305 14 H -0.270 1.270 15 C 0.173 3.827 16 H 0.037 0.963 17 C -0.137 4.137 18 C 0.046 3.954 19 H 0.053 0.947 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.037 0.963 25 H 0.063 0.937 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.261 0.739 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -12.269 3.289 12.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.078 4.078 3 N -0.260 5.260 4 C -0.088 4.088 5 C 0.004 3.996 6 N -0.331 5.331 7 C -0.383 4.383 8 H 0.108 0.892 9 C -0.178 4.178 10 N -0.556 5.556 11 Si 0.714 3.286 12 H -0.217 1.217 13 H -0.233 1.233 14 H -0.195 1.195 15 C 0.067 3.933 16 H 0.054 0.946 17 C -0.195 4.195 18 C -0.083 4.083 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.159 -12.104 3.238 12.583 hybrid contribution -0.104 -0.155 -0.822 0.842 sum 1.055 -12.259 2.417 12.539 Atomic orbital electron populations 1.22430 0.98633 1.01512 1.02419 1.22155 0.92687 0.91065 1.01907 1.62137 1.59182 1.01424 1.03233 1.22641 0.98767 0.96586 0.90830 1.21429 0.96943 0.90406 0.90868 1.44586 1.75811 1.13415 0.99246 1.18935 1.22025 0.87230 1.10068 0.89185 1.25299 0.98288 0.95740 0.98425 1.69818 1.38039 1.17574 1.30187 0.86952 0.85762 0.75842 0.80072 1.21711 1.23318 1.19496 1.20592 0.96549 0.89546 0.86642 0.94580 1.21794 1.01453 1.00482 0.95813 1.22664 0.97722 0.95849 0.92114 0.92764 0.92381 0.92490 0.91342 0.91280 0.94483 0.91864 0.95133 0.90850 0.92881 0.93950 0.91545 0.92578 0.94547 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 9.22 37.16 0.34 -2.13 16 2 C 0.05 0.69 6.07 -3.83 -0.02 0.67 16 3 N -0.54 -9.34 4.83 -234.32 -1.13 -10.48 16 4 C 0.04 0.78 5.16 -3.71 -0.02 0.76 16 5 C 0.13 2.95 4.34 -3.61 -0.02 2.94 16 6 N -0.61 -14.80 2.81 -164.19 -0.46 -15.26 16 7 C -0.25 -7.12 9.16 -15.06 -0.14 -7.26 16 8 H 0.09 2.65 6.44 -52.49 -0.34 2.31 16 9 C 0.02 0.61 5.25 -17.43 -0.09 0.52 16 10 N -0.91 -28.23 13.97 55.49 0.78 -27.46 16 11 Si 0.88 22.88 24.31 -169.99 -4.13 18.75 16 12 H -0.29 -7.22 6.59 56.52 0.37 -6.85 16 13 H -0.30 -8.03 7.11 56.52 0.40 -7.62 16 14 H -0.27 -6.97 6.62 56.52 0.37 -6.60 16 15 C 0.17 3.56 3.65 -67.28 -0.25 3.31 16 16 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 17 C -0.14 -2.59 7.96 37.16 0.30 -2.29 16 18 C 0.05 0.81 4.23 -3.70 -0.02 0.79 16 19 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 21 H 0.06 0.80 6.72 -51.93 -0.35 0.45 16 22 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.73 6.83 -51.93 -0.35 0.37 16 25 H 0.06 1.06 8.04 -51.92 -0.42 0.64 16 26 H 0.03 0.71 6.90 -51.93 -0.36 0.36 16 27 H 0.07 1.80 4.72 -51.93 -0.25 1.55 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.35 7.62 -51.93 -0.40 0.95 16 31 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 32 H 0.04 0.67 6.70 -51.93 -0.35 0.32 16 33 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 LS Contribution 246.39 15.07 3.71 3.71 Total: -1.00 -30.42 246.39 -6.41 -36.82 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -5.26 Total: -3.40 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 0.09 Total: -2.69 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.82 Total: -53.20 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.13 Total: 18.75 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.42 -6.41 -36.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223321428.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.902 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds