Wall clock time and date at job start Sun Mar 29 2020 21:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46808 * 2 1 4 4 C 1.52997 * 109.47160 * 240.00160 * 2 1 3 5 5 C 1.52998 * 109.47160 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47235 * 59.99813 * 5 4 2 7 7 H 1.09000 * 109.47352 * 59.99734 * 6 5 4 8 8 O 1.42906 * 109.47487 * 180.02562 * 6 5 4 9 9 C 1.34926 * 116.99606 * 270.00178 * 8 6 5 10 10 H 1.07995 * 120.00204 * 359.97438 * 9 8 6 11 11 C 1.38635 * 119.99537 * 180.02562 * 9 8 6 12 12 N 1.31584 * 120.00344 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99893 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47261 * 239.99659 * 13 11 9 16 16 H 1.48500 * 109.47454 * 119.99652 * 13 11 9 17 17 C 1.53007 * 109.47177 * 300.00303 * 6 5 4 18 18 C 1.52992 * 109.46998 * 59.99679 * 17 6 5 19 19 H 1.08994 * 109.47573 * 60.00405 * 18 17 6 20 20 C 1.53007 * 109.47137 * 180.02562 * 18 17 6 21 21 H 1.09003 * 109.47347 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47419 * 300.00239 * 1 2 3 23 23 H 1.09002 * 109.47024 * 60.00215 * 1 2 3 24 24 H 1.09002 * 109.47459 * 59.99890 * 4 2 1 25 25 H 1.09000 * 109.47129 * 299.99643 * 4 2 1 26 26 H 1.09003 * 109.47347 * 300.00367 * 5 4 2 27 27 H 1.08997 * 109.47419 * 179.97438 * 5 4 2 28 28 H 0.97001 * 119.99657 * 0.02562 * 12 11 9 29 29 H 1.09000 * 109.46963 * 180.02562 * 17 6 5 30 30 H 1.09000 * 109.46515 * 299.99943 * 17 6 5 31 31 H 1.08998 * 109.46867 * 179.97438 * 20 18 17 32 32 H 1.09000 * 109.46592 * 300.00277 * 20 18 17 33 33 H 1.09000 * 109.46746 * 60.00038 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7158 -2.4709 0.0002 8 8 5.5085 -1.4434 0.0010 9 6 6.1213 -2.4844 -0.6002 10 1 5.5332 -3.2688 -1.0532 11 6 7.5057 -2.5475 -0.6354 12 7 8.2222 -1.5920 -0.0830 13 14 8.3541 -3.9890 -1.4670 14 1 7.3316 -4.9216 -2.0057 15 1 9.2017 -4.7022 -0.4780 16 1 9.2035 -3.4897 -2.5781 17 6 3.5694 -0.7221 1.2496 18 6 2.0395 -0.7216 1.2492 19 1 1.6757 -1.7491 1.2490 20 6 1.5294 0.0002 2.4982 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6767 -0.2074 -2.1393 25 1 1.6767 -1.7489 -1.2492 26 1 3.9337 0.3058 -1.2486 27 1 3.9333 -1.2359 -2.1386 28 1 7.7816 -0.8437 0.3492 29 1 3.9328 -1.2360 2.1396 30 1 3.9331 0.3054 1.2498 31 1 0.4394 0.0009 2.4977 32 1 1.8924 -0.5136 3.3884 33 1 1.8931 1.0277 2.4980 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251650043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:17 Heat of formation + Delta-G solvation = -77.070141 kcal Electronic energy + Delta-G solvation = -13161.465205 eV Core-core repulsion = 10993.055135 eV Total energy + Delta-G solvation = -2168.410070 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.90842 -35.98469 -32.24797 -31.79443 -30.52195 -26.83539 -24.95568 -23.72151 -21.53147 -20.25359 -19.40944 -17.77666 -15.22389 -14.67868 -14.43396 -14.10017 -13.90133 -13.63988 -13.12521 -12.77492 -12.41229 -11.89205 -11.78210 -11.53228 -11.40080 -10.83928 -10.65096 -10.57448 -10.45125 -10.14211 -10.11628 -9.78418 -9.67581 -9.26368 -9.02343 -7.87350 -6.21948 -3.51921 3.43363 3.51378 3.61092 4.47409 4.86684 4.95150 5.01625 5.29971 5.45042 5.55932 5.60540 5.67931 5.77802 5.82623 5.86224 5.88781 5.99940 6.06446 6.14021 6.19620 6.21919 6.31693 6.42713 6.54143 6.65708 6.67163 6.83880 6.99720 7.06160 7.77625 8.92565 9.53101 10.19392 11.26284 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062142 B = 0.008306 C = 0.007780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.474810 B = 3370.185617 C = 3598.083197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.110 4.110 5 C -0.138 4.138 6 C 0.108 3.892 7 H 0.036 0.964 8 O -0.314 6.314 9 C -0.443 4.443 10 H 0.052 0.948 11 C -0.011 4.011 12 N -0.918 5.918 13 Si 1.094 2.906 14 H -0.291 1.291 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.109 4.109 18 C -0.083 4.083 19 H 0.066 0.934 20 C -0.146 4.146 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.275 0.725 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.001 1.925 0.763 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.148 4.148 5 C -0.176 4.176 6 C 0.049 3.951 7 H 0.055 0.945 8 O -0.229 6.229 9 C -0.522 4.522 10 H 0.069 0.931 11 C -0.211 4.211 12 N -0.558 5.558 13 Si 0.922 3.078 14 H -0.217 1.217 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.147 4.147 18 C -0.101 4.101 19 H 0.085 0.915 20 C -0.203 4.203 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.428 1.417 0.474 12.518 hybrid contribution -1.726 0.455 0.188 1.795 sum -14.154 1.873 0.662 14.292 Atomic orbital electron populations 1.21893 0.95840 1.01494 1.01209 1.21178 0.94737 0.99710 0.94955 0.91357 1.21560 0.96350 1.00035 0.96808 1.22065 0.93764 1.01502 1.00243 1.21617 0.84698 0.96457 0.92340 0.94548 1.85361 1.14097 1.46114 1.77368 1.21794 0.92315 1.00878 1.37203 0.93065 1.26011 0.91692 1.03740 0.99609 1.70502 1.38254 1.11125 1.35892 0.83091 0.75196 0.73587 0.75913 1.21742 1.21244 1.21244 1.21613 0.93354 1.01262 0.98431 1.21101 0.95523 0.99312 0.94195 0.91543 1.21873 1.00450 1.00511 0.97502 0.92945 0.92632 0.93116 0.92586 0.92474 0.92246 0.92042 0.91504 0.91997 0.91967 0.92731 0.92863 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.84 37.16 0.33 -1.31 16 2 C -0.09 -1.21 2.25 -90.62 -0.20 -1.41 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.11 -1.69 5.20 -26.73 -0.14 -1.83 16 5 C -0.14 -2.73 5.54 -26.73 -0.15 -2.88 16 6 C 0.11 2.44 2.65 -26.73 -0.07 2.37 16 7 H 0.04 0.84 7.80 -51.93 -0.41 0.44 16 8 O -0.31 -9.13 8.83 -16.50 -0.15 -9.27 16 9 C -0.44 -13.45 9.77 30.88 0.30 -13.15 16 10 H 0.05 1.51 7.64 -52.49 -0.40 1.11 16 11 C -0.01 -0.33 5.49 -17.51 -0.10 -0.43 16 12 N -0.92 -29.95 13.70 55.48 0.76 -29.19 16 13 Si 1.09 26.34 29.92 -169.99 -5.09 21.26 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 C -0.11 -2.06 4.85 -26.73 -0.13 -2.19 16 18 C -0.08 -1.22 2.25 -90.62 -0.20 -1.42 16 19 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.15 -1.81 8.84 37.16 0.33 -1.48 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.28 9.19 7.97 -40.82 -0.33 8.86 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.58 6.43 -51.93 -0.33 0.25 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 263.43 15.07 3.97 3.97 Total: -1.00 -32.81 263.43 -6.20 -39.01 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.67 Total: -2.06 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -0.03 Total: -23.72 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 0.76 Total: -29.19 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.15 Total: -9.27 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -5.09 Total: 21.26 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.81 -6.20 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251650043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.059 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds