Wall clock time and date at job start Sun Mar 29 2020 21:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46808 * 2 1 4 4 C 1.52997 * 109.47160 * 240.00160 * 2 1 3 5 5 C 1.52998 * 109.47160 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47235 * 59.99813 * 5 4 2 7 7 H 1.09000 * 109.47352 * 59.99734 * 6 5 4 8 8 O 1.42906 * 109.47487 * 180.02562 * 6 5 4 9 9 C 1.34926 * 116.99606 * 270.00178 * 8 6 5 10 10 H 1.07995 * 120.00204 * 359.97438 * 9 8 6 11 11 C 1.38635 * 119.99537 * 180.02562 * 9 8 6 12 12 N 1.31584 * 120.00344 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99893 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47261 * 239.99659 * 13 11 9 16 16 H 1.48500 * 109.47454 * 119.99652 * 13 11 9 17 17 C 1.53007 * 109.47177 * 300.00303 * 6 5 4 18 18 C 1.52992 * 109.46998 * 59.99679 * 17 6 5 19 19 H 1.08994 * 109.47573 * 60.00405 * 18 17 6 20 20 C 1.53007 * 109.47137 * 180.02562 * 18 17 6 21 21 H 1.09003 * 109.47347 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47419 * 300.00239 * 1 2 3 23 23 H 1.09002 * 109.47024 * 60.00215 * 1 2 3 24 24 H 1.09002 * 109.47459 * 59.99890 * 4 2 1 25 25 H 1.09000 * 109.47129 * 299.99643 * 4 2 1 26 26 H 1.09003 * 109.47347 * 300.00367 * 5 4 2 27 27 H 1.08997 * 109.47419 * 179.97438 * 5 4 2 28 28 H 0.97001 * 119.99657 * 0.02562 * 12 11 9 29 29 H 1.09000 * 109.46963 * 180.02562 * 17 6 5 30 30 H 1.09000 * 109.46515 * 299.99943 * 17 6 5 31 31 H 1.08998 * 109.46867 * 179.97438 * 20 18 17 32 32 H 1.09000 * 109.46592 * 300.00277 * 20 18 17 33 33 H 1.09000 * 109.46746 * 60.00038 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 3.7158 -2.4709 0.0002 8 8 5.5085 -1.4434 0.0010 9 6 6.1213 -2.4844 -0.6002 10 1 5.5332 -3.2688 -1.0532 11 6 7.5057 -2.5475 -0.6354 12 7 8.2222 -1.5920 -0.0830 13 14 8.3541 -3.9890 -1.4670 14 1 7.3316 -4.9216 -2.0057 15 1 9.2017 -4.7022 -0.4780 16 1 9.2035 -3.4897 -2.5781 17 6 3.5694 -0.7221 1.2496 18 6 2.0395 -0.7216 1.2492 19 1 1.6757 -1.7491 1.2490 20 6 1.5294 0.0002 2.4982 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6767 -0.2074 -2.1393 25 1 1.6767 -1.7489 -1.2492 26 1 3.9337 0.3058 -1.2486 27 1 3.9333 -1.2359 -2.1386 28 1 7.7816 -0.8437 0.3492 29 1 3.9328 -1.2360 2.1396 30 1 3.9331 0.3054 1.2498 31 1 0.4394 0.0009 2.4977 32 1 1.8924 -0.5136 3.3884 33 1 1.8931 1.0277 2.4980 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251650043.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:16 Heat of formation + Delta-G solvation = -97.527892 kcal Electronic energy + Delta-G solvation = -13162.352320 eV Core-core repulsion = 10993.055135 eV Total energy + Delta-G solvation = -2169.297185 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.38663 -37.92264 -34.21049 -33.18937 -32.22925 -28.13626 -26.49276 -25.76501 -22.84228 -21.85292 -20.80305 -19.92388 -17.14396 -16.57811 -15.79422 -15.50330 -15.46242 -15.19808 -14.90243 -14.20200 -13.75383 -13.24748 -13.06141 -12.72359 -12.65439 -12.59244 -12.39736 -12.02762 -11.91640 -11.89513 -11.58526 -11.44511 -11.24294 -11.09409 -10.83661 -10.13662 -8.67687 -5.95453 1.49264 1.63658 1.76563 2.49460 3.16792 3.40160 3.69051 3.78176 4.02588 4.13624 4.24192 4.34456 4.46495 4.48473 4.59410 4.70072 4.72438 4.88819 4.93884 4.98457 5.08122 5.10714 5.12050 5.16986 5.25563 5.28158 5.39155 5.44973 5.54188 5.59161 6.45390 7.18204 7.93219 8.81656 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062142 B = 0.008306 C = 0.007780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.474810 B = 3370.185617 C = 3598.083197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.102 4.102 5 C -0.131 4.131 6 C 0.095 3.905 7 H 0.027 0.973 8 O -0.353 6.353 9 C -0.450 4.450 10 H 0.054 0.946 11 C -0.070 4.070 12 N -0.944 5.944 13 Si 1.146 2.854 14 H -0.266 1.266 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.103 4.103 18 C -0.077 4.077 19 H 0.069 0.931 20 C -0.142 4.142 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.254 0.746 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.032 1.473 0.378 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.139 4.139 5 C -0.169 4.169 6 C 0.037 3.963 7 H 0.046 0.954 8 O -0.270 6.270 9 C -0.529 4.529 10 H 0.072 0.928 11 C -0.261 4.261 12 N -0.585 5.585 13 Si 0.964 3.036 14 H -0.191 1.191 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.141 4.141 18 C -0.095 4.095 19 H 0.087 0.913 20 C -0.199 4.199 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.505 0.979 0.097 14.539 hybrid contribution -1.156 0.633 0.329 1.358 sum -15.661 1.611 0.425 15.750 Atomic orbital electron populations 1.21835 0.92914 1.02346 1.02659 1.21175 0.97049 0.98979 0.93195 0.91570 1.21537 0.92354 1.01118 0.98932 1.21961 0.97418 0.99917 0.97623 1.22044 0.81726 0.96977 0.95571 0.95450 1.85311 1.17836 1.46148 1.77733 1.22167 0.92977 1.01120 1.36655 0.92802 1.27985 0.92912 1.05773 0.99468 1.70669 1.38199 1.11711 1.37939 0.82518 0.74991 0.70614 0.75471 1.19097 1.19966 1.19999 1.21610 0.96801 0.99786 0.95857 1.21093 0.91832 1.00250 0.96360 0.91270 1.21845 1.02048 1.00094 0.95893 0.92379 0.91089 0.91885 0.90366 0.91923 0.93255 0.94220 0.93821 0.93418 0.92820 0.90065 0.92927 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.84 71.98 0.64 -1.91 16 2 C -0.09 -2.14 2.25 -10.79 -0.02 -2.16 16 3 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.10 -2.95 5.20 30.59 0.16 -2.79 16 5 C -0.13 -5.27 5.54 30.59 0.17 -5.10 16 6 C 0.09 4.41 2.65 30.60 0.08 4.49 16 7 H 0.03 1.30 7.80 -2.39 -0.02 1.28 16 8 O -0.35 -21.43 8.83 -81.95 -0.72 -22.15 16 9 C -0.45 -28.07 9.77 67.91 0.66 -27.41 16 10 H 0.05 3.23 7.64 -2.91 -0.02 3.21 16 11 C -0.07 -4.32 5.49 84.82 0.47 -3.85 16 12 N -0.94 -63.29 13.70 21.61 0.30 -63.00 16 13 Si 1.15 52.66 29.92 68.60 2.05 54.71 16 14 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 C -0.10 -3.94 4.85 30.59 0.15 -3.80 16 18 C -0.08 -2.13 2.25 -10.79 -0.02 -2.16 16 19 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 20 C -0.14 -3.13 8.84 71.98 0.64 -2.49 16 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.07 1.10 6.43 -2.39 -0.02 1.08 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.25 17.71 7.97 -92.71 -0.74 16.97 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 1.39 6.43 -2.39 -0.02 1.38 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -73.04 263.43 5.61 -67.43 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.08 Total: 10.19 kcal Atomic # 6 Polarization: -50.09 SS G_CDS: 2.91 Total: -47.17 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.30 Total: -63.00 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.72 Total: -22.15 kcal Atomic # 14 Polarization: 52.66 SS G_CDS: 2.05 Total: 54.71 kcal Total: -73.04 5.61 -67.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251650043.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.103 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds